Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 47713 | 0.73 | 0.309764 |
Target: 5'- cGUCGACUGCUGCGccugcugacgggcGCGGuGCgCgUAGCg -3' miRNA: 3'- -CAGCUGACGAUGC-------------UGCCuUG-GgGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 27342 | 0.73 | 0.295428 |
Target: 5'- -cCGGCUGCUGCGGCGccGGGCUCUgcugGGCg -3' miRNA: 3'- caGCUGACGAUGCUGC--CUUGGGG----UCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 9049 | 0.74 | 0.280901 |
Target: 5'- -gCGGCUGCacggGCGGCaGGuguggugguucGGCCCCAGCa -3' miRNA: 3'- caGCUGACGa---UGCUG-CC-----------UUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 40770 | 0.74 | 0.273853 |
Target: 5'- cUCGugUgGCUGacguUGGCGGAcggcACCCCGGCg -3' miRNA: 3'- cAGCugA-CGAU----GCUGCCU----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 40650 | 0.74 | 0.273853 |
Target: 5'- -cUGACgcugGCUGCGccgcgcaaccucGCGGAGCCgCCGGCg -3' miRNA: 3'- caGCUGa---CGAUGC------------UGCCUUGG-GGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 19373 | 0.76 | 0.189564 |
Target: 5'- cUCGACgUGCUgugcagccGCGugGGccgguACCCCAGCa -3' miRNA: 3'- cAGCUG-ACGA--------UGCugCCu----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10962 | 0.78 | 0.140207 |
Target: 5'- cUCGAUgaCUugGGCGGAugCCCGGCg -3' miRNA: 3'- cAGCUGacGAugCUGCCUugGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 37718 | 1.13 | 0.000518 |
Target: 5'- cGUCGACUGCUACGACGGAACCCCAGCg -3' miRNA: 3'- -CAGCUGACGAUGCUGCCUUGGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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