miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 31802 0.68 0.555889
Target:  5'- -cCGGCcGCUcGCGACGGAcacACCCgAGg -3'
miRNA:   3'- caGCUGaCGA-UGCUGCCU---UGGGgUCg -5'
11597 3' -55.3 NC_003085.1 + 21157 0.68 0.545097
Target:  5'- gGUgGACUGgUACGugGaGGGCUaCAGCg -3'
miRNA:   3'- -CAgCUGACgAUGCugC-CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 11801 0.68 0.545097
Target:  5'- uGUCGGCUGCcccauCGcCGGGuGCCCCGacGCu -3'
miRNA:   3'- -CAGCUGACGau---GCuGCCU-UGGGGU--CG- -5'
11597 3' -55.3 NC_003085.1 + 48710 0.69 0.534374
Target:  5'- ---aACUGCgGCGAC-GAACUCCGGCa -3'
miRNA:   3'- cagcUGACGaUGCUGcCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 49290 0.69 0.513162
Target:  5'- -gUGGCUGCUGCGucgcguCGGcgUCCCGGg -3'
miRNA:   3'- caGCUGACGAUGCu-----GCCuuGGGGUCg -5'
11597 3' -55.3 NC_003085.1 + 26536 0.69 0.51211
Target:  5'- cGUCGAC-GCgGCcuCGGAgggcuucGCCCCGGCa -3'
miRNA:   3'- -CAGCUGaCGaUGcuGCCU-------UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 25774 0.69 0.49956
Target:  5'- --aGGCUGCUGCG-CGGGcccgcugcguggacGCCUgGGCg -3'
miRNA:   3'- cagCUGACGAUGCuGCCU--------------UGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 10811 0.69 0.482021
Target:  5'- -gCGAgUGCcACuggaGGCGGcaAACCCCAGCg -3'
miRNA:   3'- caGCUgACGaUG----CUGCC--UUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 49110 0.7 0.471843
Target:  5'- cUCG--UGCU--GACGGGGCCCCGGUg -3'
miRNA:   3'- cAGCugACGAugCUGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 2889 0.7 0.45579
Target:  5'- aUCG-CUGCgUAUGucgggaaggaccucuACGGGGCCCCAGUc -3'
miRNA:   3'- cAGCuGACG-AUGC---------------UGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 31656 0.7 0.441988
Target:  5'- -cCGACUGCU-CGGCGGcagauuggucgGACUCgGGCg -3'
miRNA:   3'- caGCUGACGAuGCUGCC-----------UUGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 10835 0.71 0.422689
Target:  5'- -gCGACUGCgggaGugGGAugcgaGCUCCGGCc -3'
miRNA:   3'- caGCUGACGaug-CugCCU-----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 39227 0.71 0.421738
Target:  5'- cUCGGCcagGCUACGGCGuacaacgcacucuGGGCCgCAGCa -3'
miRNA:   3'- cAGCUGa--CGAUGCUGC-------------CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 27488 0.71 0.413231
Target:  5'- cGUCGGCcUGUggaacuggacgUACGACGGcGGCgCCGGCa -3'
miRNA:   3'- -CAGCUG-ACG-----------AUGCUGCC-UUGgGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 23455 0.71 0.394713
Target:  5'- --gGAC-GC-AUGACGGAGgCCCAGCg -3'
miRNA:   3'- cagCUGaCGaUGCUGCCUUgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 43363 0.71 0.37674
Target:  5'- gGUCGGCaUGCagGCGACGGAGgacuCCCUggGGCc -3'
miRNA:   3'- -CAGCUG-ACGa-UGCUGCCUU----GGGG--UCG- -5'
11597 3' -55.3 NC_003085.1 + 38672 0.72 0.359327
Target:  5'- cUCGcACcGCUGCG-CGGAAgagguggcaugcCCCCAGCg -3'
miRNA:   3'- cAGC-UGaCGAUGCuGCCUU------------GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 15198 0.72 0.354214
Target:  5'- -gCGGCUGCUacgucccugugaaggGCGAgGGcccuGCCCCGGUg -3'
miRNA:   3'- caGCUGACGA---------------UGCUgCCu---UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 17905 0.72 0.342484
Target:  5'- aGUgGACUGCgucguaGACGGGugccuGCgCCCAGCg -3'
miRNA:   3'- -CAgCUGACGaug---CUGCCU-----UG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 47487 0.72 0.341657
Target:  5'- --gGGCUGCUcaugcacGCGGCGGAACCUguCGGUg -3'
miRNA:   3'- cagCUGACGA-------UGCUGCCUUGGG--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.