miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 9049 0.74 0.280901
Target:  5'- -gCGGCUGCacggGCGGCaGGuguggugguucGGCCCCAGCa -3'
miRNA:   3'- caGCUGACGa---UGCUG-CC-----------UUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 47713 0.73 0.309764
Target:  5'- cGUCGACUGCUGCGccugcugacgggcGCGGuGCgCgUAGCg -3'
miRNA:   3'- -CAGCUGACGAUGC-------------UGCCuUG-GgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 17905 0.72 0.342484
Target:  5'- aGUgGACUGCgucguaGACGGGugccuGCgCCCAGCg -3'
miRNA:   3'- -CAgCUGACGaug---CUGCCU-----UG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 23455 0.71 0.394713
Target:  5'- --gGAC-GC-AUGACGGAGgCCCAGCg -3'
miRNA:   3'- cagCUGaCGaUGCUGCCUUgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 27488 0.71 0.413231
Target:  5'- cGUCGGCcUGUggaacuggacgUACGACGGcGGCgCCGGCa -3'
miRNA:   3'- -CAGCUG-ACG-----------AUGCUGCC-UUGgGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 39227 0.71 0.421738
Target:  5'- cUCGGCcagGCUACGGCGuacaacgcacucuGGGCCgCAGCa -3'
miRNA:   3'- cAGCUGa--CGAUGCUGC-------------CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 10835 0.71 0.422689
Target:  5'- -gCGACUGCgggaGugGGAugcgaGCUCCGGCc -3'
miRNA:   3'- caGCUGACGaug-CugCCU-----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 16714 0.67 0.632682
Target:  5'- aGUCGAgcgagcacuCUGCUcuGCGAUGGcauCCUCGGUg -3'
miRNA:   3'- -CAGCU---------GACGA--UGCUGCCuu-GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 18663 0.67 0.621638
Target:  5'- -gUGAUUGCUGCGGCGc-GCUCaCGGCu -3'
miRNA:   3'- caGCUGACGAUGCUGCcuUGGG-GUCG- -5'
11597 3' -55.3 NC_003085.1 + 26097 0.67 0.599587
Target:  5'- gGUCGAagUGCUGgGGCuGcGCCUCGGCg -3'
miRNA:   3'- -CAGCUg-ACGAUgCUGcCuUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 9755 0.68 0.576555
Target:  5'- cUUGcGCUGCgccucaACGGCGGAgagacgaGCCuCCAGCg -3'
miRNA:   3'- cAGC-UGACGa-----UGCUGCCU-------UGG-GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 48710 0.69 0.534374
Target:  5'- ---aACUGCgGCGAC-GAACUCCGGCa -3'
miRNA:   3'- cagcUGACGaUGCUGcCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 5822 0.67 0.654759
Target:  5'- --gGGCUGCUGgaGGCGGAuggccuCCCguGCc -3'
miRNA:   3'- cagCUGACGAUg-CUGCCUu-----GGGguCG- -5'
11597 3' -55.3 NC_003085.1 + 20590 0.66 0.665771
Target:  5'- -gCGACUGCUgcucggcaGCGccGCGGAAgUCgGGCg -3'
miRNA:   3'- caGCUGACGA--------UGC--UGCCUUgGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 2787 0.66 0.687689
Target:  5'- -gCGGCgGCgcuccagGCGGCGGcgaagcGCCUCGGCa -3'
miRNA:   3'- caGCUGaCGa------UGCUGCCu-----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 20425 0.66 0.687689
Target:  5'- -aCuGCUGCUggACGGCguuGGAGgcaucCCCCAGCg -3'
miRNA:   3'- caGcUGACGA--UGCUG---CCUU-----GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 41030 0.66 0.687689
Target:  5'- -aCGGCUGCUGCuGGCcGAGCaccugaaacugCCAGCg -3'
miRNA:   3'- caGCUGACGAUG-CUGcCUUGg----------GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 34420 0.66 0.687689
Target:  5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3'
miRNA:   3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 1345 0.66 0.698573
Target:  5'- --aGACUGCUgGCGACGuuGCCgCCAaGUa -3'
miRNA:   3'- cagCUGACGA-UGCUGCcuUGG-GGU-CG- -5'
11597 3' -55.3 NC_003085.1 + 27342 0.73 0.295428
Target:  5'- -cCGGCUGCUGCGGCGccGGGCUCUgcugGGCg -3'
miRNA:   3'- caGCUGACGAUGCUGC--CUUGGGG----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.