Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 23356 | 0.67 | 0.599587 |
Target: 5'- -cCGGCcGCcgaGGCGcAGCCCCAGCa -3' miRNA: 3'- caGCUGaCGaugCUGCcUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 31656 | 0.7 | 0.441988 |
Target: 5'- -cCGACUGCU-CGGCGGcagauuggucgGACUCgGGCg -3' miRNA: 3'- caGCUGACGAuGCUGCC-----------UUGGGgUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 2889 | 0.7 | 0.45579 |
Target: 5'- aUCG-CUGCgUAUGucgggaaggaccucuACGGGGCCCCAGUc -3' miRNA: 3'- cAGCuGACG-AUGC---------------UGCCUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 49110 | 0.7 | 0.471843 |
Target: 5'- cUCG--UGCU--GACGGGGCCCCGGUg -3' miRNA: 3'- cAGCugACGAugCUGCCUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 49290 | 0.69 | 0.513162 |
Target: 5'- -gUGGCUGCUGCGucgcguCGGcgUCCCGGg -3' miRNA: 3'- caGCUGACGAUGCu-----GCCuuGGGGUCg -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 11801 | 0.68 | 0.545097 |
Target: 5'- uGUCGGCUGCcccauCGcCGGGuGCCCCGacGCu -3' miRNA: 3'- -CAGCUGACGau---GCuGCCU-UGGGGU--CG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 21157 | 0.68 | 0.545097 |
Target: 5'- gGUgGACUGgUACGugGaGGGCUaCAGCg -3' miRNA: 3'- -CAgCUGACgAUGCugC-CUUGGgGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 31802 | 0.68 | 0.555889 |
Target: 5'- -cCGGCcGCUcGCGACGGAcacACCCgAGg -3' miRNA: 3'- caGCUGaCGA-UGCUGCCU---UGGGgUCg -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 37139 | 0.68 | 0.566741 |
Target: 5'- --gGGCacgGCgACGGCGGGcACCCUGGCg -3' miRNA: 3'- cagCUGa--CGaUGCUGCCU-UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10835 | 0.71 | 0.422689 |
Target: 5'- -gCGACUGCgggaGugGGAugcgaGCUCCGGCc -3' miRNA: 3'- caGCUGACGaug-CugCCU-----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 39227 | 0.71 | 0.421738 |
Target: 5'- cUCGGCcagGCUACGGCGuacaacgcacucuGGGCCgCAGCa -3' miRNA: 3'- cAGCUGa--CGAUGCUGC-------------CUUGGgGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 27488 | 0.71 | 0.413231 |
Target: 5'- cGUCGGCcUGUggaacuggacgUACGACGGcGGCgCCGGCa -3' miRNA: 3'- -CAGCUG-ACG-----------AUGCUGCC-UUGgGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10962 | 0.78 | 0.140207 |
Target: 5'- cUCGAUgaCUugGGCGGAugCCCGGCg -3' miRNA: 3'- cAGCUGacGAugCUGCCUugGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 19373 | 0.76 | 0.189564 |
Target: 5'- cUCGACgUGCUgugcagccGCGugGGccgguACCCCAGCa -3' miRNA: 3'- cAGCUG-ACGA--------UGCugCCu----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 40650 | 0.74 | 0.273853 |
Target: 5'- -cUGACgcugGCUGCGccgcgcaaccucGCGGAGCCgCCGGCg -3' miRNA: 3'- caGCUGa---CGAUGC------------UGCCUUGG-GGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 40770 | 0.74 | 0.273853 |
Target: 5'- cUCGugUgGCUGacguUGGCGGAcggcACCCCGGCg -3' miRNA: 3'- cAGCugA-CGAU----GCUGCCU----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 9049 | 0.74 | 0.280901 |
Target: 5'- -gCGGCUGCacggGCGGCaGGuguggugguucGGCCCCAGCa -3' miRNA: 3'- caGCUGACGa---UGCUG-CC-----------UUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 47713 | 0.73 | 0.309764 |
Target: 5'- cGUCGACUGCUGCGccugcugacgggcGCGGuGCgCgUAGCg -3' miRNA: 3'- -CAGCUGACGAUGC-------------UGCCuUG-GgGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 17905 | 0.72 | 0.342484 |
Target: 5'- aGUgGACUGCgucguaGACGGGugccuGCgCCCAGCg -3' miRNA: 3'- -CAgCUGACGaug---CUGCCU-----UG-GGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 23455 | 0.71 | 0.394713 |
Target: 5'- --gGAC-GC-AUGACGGAGgCCCAGCg -3' miRNA: 3'- cagCUGaCGaUGCUGCCUUgGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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