miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 601 0.66 0.717993
Target:  5'- -gCGACUGCaagcccgucgcggccUACGGCGGGuugugcugcgccaagGCgCUCGGCg -3'
miRNA:   3'- caGCUGACG---------------AUGCUGCCU---------------UG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 38672 0.72 0.359327
Target:  5'- cUCGcACcGCUGCG-CGGAAgagguggcaugcCCCCAGCg -3'
miRNA:   3'- cAGC-UGaCGAUGCuGCCUU------------GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 47487 0.72 0.341657
Target:  5'- --gGGCUGCUcaugcacGCGGCGGAACCUguCGGUg -3'
miRNA:   3'- cagCUGACGA-------UGCUGCCUUGGG--GUCG- -5'
11597 3' -55.3 NC_003085.1 + 27342 0.73 0.295428
Target:  5'- -cCGGCUGCUGCGGCGccGGGCUCUgcugGGCg -3'
miRNA:   3'- caGCUGACGAUGCUGC--CUUGGGG----UCG- -5'
11597 3' -55.3 NC_003085.1 + 20425 0.66 0.687689
Target:  5'- -aCuGCUGCUggACGGCguuGGAGgcaucCCCCAGCg -3'
miRNA:   3'- caGcUGACGA--UGCUG---CCUU-----GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 2787 0.66 0.687689
Target:  5'- -gCGGCgGCgcuccagGCGGCGGcgaagcGCCUCGGCa -3'
miRNA:   3'- caGCUGaCGa------UGCUGCCu-----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 5822 0.67 0.654759
Target:  5'- --gGGCUGCUGgaGGCGGAuggccuCCCguGCc -3'
miRNA:   3'- cagCUGACGAUg-CUGCCUu-----GGGguCG- -5'
11597 3' -55.3 NC_003085.1 + 16714 0.67 0.632682
Target:  5'- aGUCGAgcgagcacuCUGCUcuGCGAUGGcauCCUCGGUg -3'
miRNA:   3'- -CAGCU---------GACGA--UGCUGCCuu-GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 9755 0.68 0.576555
Target:  5'- cUUGcGCUGCgccucaACGGCGGAgagacgaGCCuCCAGCg -3'
miRNA:   3'- cAGC-UGACGa-----UGCUGCCU-------UGG-GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 43363 0.71 0.37674
Target:  5'- gGUCGGCaUGCagGCGACGGAGgacuCCCUggGGCc -3'
miRNA:   3'- -CAGCUG-ACGa-UGCUGCCUU----GGGG--UCG- -5'
11597 3' -55.3 NC_003085.1 + 26536 0.69 0.51211
Target:  5'- cGUCGAC-GCgGCcuCGGAgggcuucGCCCCGGCa -3'
miRNA:   3'- -CAGCUGaCGaUGcuGCCU-------UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 26097 0.67 0.599587
Target:  5'- gGUCGAagUGCUGgGGCuGcGCCUCGGCg -3'
miRNA:   3'- -CAGCUg-ACGAUgCUGcCuUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 1345 0.66 0.698573
Target:  5'- --aGACUGCUgGCGACGuuGCCgCCAaGUa -3'
miRNA:   3'- cagCUGACGA-UGCUGCcuUGG-GGU-CG- -5'
11597 3' -55.3 NC_003085.1 + 25774 0.69 0.49956
Target:  5'- --aGGCUGCUGCG-CGGGcccgcugcguggacGCCUgGGCg -3'
miRNA:   3'- cagCUGACGAUGCuGCCU--------------UGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 34420 0.66 0.687689
Target:  5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3'
miRNA:   3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 18663 0.67 0.621638
Target:  5'- -gUGAUUGCUGCGGCGc-GCUCaCGGCu -3'
miRNA:   3'- caGCUGACGAUGCUGCcuUGGG-GUCG- -5'
11597 3' -55.3 NC_003085.1 + 10811 0.69 0.482021
Target:  5'- -gCGAgUGCcACuggaGGCGGcaAACCCCAGCg -3'
miRNA:   3'- caGCUgACGaUG----CUGCC--UUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 15198 0.72 0.354214
Target:  5'- -gCGGCUGCUacgucccugugaaggGCGAgGGcccuGCCCCGGUg -3'
miRNA:   3'- caGCUGACGA---------------UGCUgCCu---UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 41030 0.66 0.687689
Target:  5'- -aCGGCUGCUGCuGGCcGAGCaccugaaacugCCAGCg -3'
miRNA:   3'- caGCUGACGAUG-CUGcCUUGg----------GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 20590 0.66 0.665771
Target:  5'- -gCGACUGCUgcucggcaGCGccGCGGAAgUCgGGCg -3'
miRNA:   3'- caGCUGACGA--------UGC--UGCCUUgGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.