Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11597 | 3' | -55.3 | NC_003085.1 | + | 601 | 0.66 | 0.717993 |
Target: 5'- -gCGACUGCaagcccgucgcggccUACGGCGGGuugugcugcgccaagGCgCUCGGCg -3' miRNA: 3'- caGCUGACG---------------AUGCUGCCU---------------UG-GGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 1345 | 0.66 | 0.698573 |
Target: 5'- --aGACUGCUgGCGACGuuGCCgCCAaGUa -3' miRNA: 3'- cagCUGACGA-UGCUGCcuUGG-GGU-CG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 2787 | 0.66 | 0.687689 |
Target: 5'- -gCGGCgGCgcuccagGCGGCGGcgaagcGCCUCGGCa -3' miRNA: 3'- caGCUGaCGa------UGCUGCCu-----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 2889 | 0.7 | 0.45579 |
Target: 5'- aUCG-CUGCgUAUGucgggaaggaccucuACGGGGCCCCAGUc -3' miRNA: 3'- cAGCuGACG-AUGC---------------UGCCUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 4114 | 0.66 | 0.709392 |
Target: 5'- aGUUGGgcGCcGCGcUGGGACUCCAGCg -3' miRNA: 3'- -CAGCUgaCGaUGCuGCCUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 5822 | 0.67 | 0.654759 |
Target: 5'- --gGGCUGCUGgaGGCGGAuggccuCCCguGCc -3' miRNA: 3'- cagCUGACGAUg-CUGCCUu-----GGGguCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 9049 | 0.74 | 0.280901 |
Target: 5'- -gCGGCUGCacggGCGGCaGGuguggugguucGGCCCCAGCa -3' miRNA: 3'- caGCUGACGa---UGCUG-CC-----------UUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 9755 | 0.68 | 0.576555 |
Target: 5'- cUUGcGCUGCgccucaACGGCGGAgagacgaGCCuCCAGCg -3' miRNA: 3'- cAGC-UGACGa-----UGCUGCCU-------UGG-GGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10811 | 0.69 | 0.482021 |
Target: 5'- -gCGAgUGCcACuggaGGCGGcaAACCCCAGCg -3' miRNA: 3'- caGCUgACGaUG----CUGCC--UUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10835 | 0.71 | 0.422689 |
Target: 5'- -gCGACUGCgggaGugGGAugcgaGCUCCGGCc -3' miRNA: 3'- caGCUGACGaug-CugCCU-----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 10962 | 0.78 | 0.140207 |
Target: 5'- cUCGAUgaCUugGGCGGAugCCCGGCg -3' miRNA: 3'- cAGCUGacGAugCUGCCUugGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 11801 | 0.68 | 0.545097 |
Target: 5'- uGUCGGCUGCcccauCGcCGGGuGCCCCGacGCu -3' miRNA: 3'- -CAGCUGACGau---GCuGCCU-UGGGGU--CG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 15198 | 0.72 | 0.354214 |
Target: 5'- -gCGGCUGCUacgucccugugaaggGCGAgGGcccuGCCCCGGUg -3' miRNA: 3'- caGCUGACGA---------------UGCUgCCu---UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 16714 | 0.67 | 0.632682 |
Target: 5'- aGUCGAgcgagcacuCUGCUcuGCGAUGGcauCCUCGGUg -3' miRNA: 3'- -CAGCU---------GACGA--UGCUGCCuu-GGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 17322 | 0.66 | 0.676751 |
Target: 5'- cGUCGuccgaUGCgacguuugACG-UGGAACCCUGGCg -3' miRNA: 3'- -CAGCug---ACGa-------UGCuGCCUUGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 17905 | 0.72 | 0.342484 |
Target: 5'- aGUgGACUGCgucguaGACGGGugccuGCgCCCAGCg -3' miRNA: 3'- -CAgCUGACGaug---CUGCCU-----UG-GGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 18663 | 0.67 | 0.621638 |
Target: 5'- -gUGAUUGCUGCGGCGc-GCUCaCGGCu -3' miRNA: 3'- caGCUGACGAUGCUGCcuUGGG-GUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 19373 | 0.76 | 0.189564 |
Target: 5'- cUCGACgUGCUgugcagccGCGugGGccgguACCCCAGCa -3' miRNA: 3'- cAGCUG-ACGA--------UGCugCCu----UGGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 20425 | 0.66 | 0.687689 |
Target: 5'- -aCuGCUGCUggACGGCguuGGAGgcaucCCCCAGCg -3' miRNA: 3'- caGcUGACGA--UGCUG---CCUU-----GGGGUCG- -5' |
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11597 | 3' | -55.3 | NC_003085.1 | + | 20590 | 0.66 | 0.665771 |
Target: 5'- -gCGACUGCUgcucggcaGCGccGCGGAAgUCgGGCg -3' miRNA: 3'- caGCUGACGA--------UGC--UGCCUUgGGgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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