miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 37718 1.13 0.000518
Target:  5'- cGUCGACUGCUACGACGGAACCCCAGCg -3'
miRNA:   3'- -CAGCUGACGAUGCUGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 10962 0.78 0.140207
Target:  5'- cUCGAUgaCUugGGCGGAugCCCGGCg -3'
miRNA:   3'- cAGCUGacGAugCUGCCUugGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 19373 0.76 0.189564
Target:  5'- cUCGACgUGCUgugcagccGCGugGGccgguACCCCAGCa -3'
miRNA:   3'- cAGCUG-ACGA--------UGCugCCu----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 40650 0.74 0.273853
Target:  5'- -cUGACgcugGCUGCGccgcgcaaccucGCGGAGCCgCCGGCg -3'
miRNA:   3'- caGCUGa---CGAUGC------------UGCCUUGG-GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 40770 0.74 0.273853
Target:  5'- cUCGugUgGCUGacguUGGCGGAcggcACCCCGGCg -3'
miRNA:   3'- cAGCugA-CGAU----GCUGCCU----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 9049 0.74 0.280901
Target:  5'- -gCGGCUGCacggGCGGCaGGuguggugguucGGCCCCAGCa -3'
miRNA:   3'- caGCUGACGa---UGCUG-CC-----------UUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 27342 0.73 0.295428
Target:  5'- -cCGGCUGCUGCGGCGccGGGCUCUgcugGGCg -3'
miRNA:   3'- caGCUGACGAUGCUGC--CUUGGGG----UCG- -5'
11597 3' -55.3 NC_003085.1 + 47713 0.73 0.309764
Target:  5'- cGUCGACUGCUGCGccugcugacgggcGCGGuGCgCgUAGCg -3'
miRNA:   3'- -CAGCUGACGAUGC-------------UGCCuUG-GgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 47487 0.72 0.341657
Target:  5'- --gGGCUGCUcaugcacGCGGCGGAACCUguCGGUg -3'
miRNA:   3'- cagCUGACGA-------UGCUGCCUUGGG--GUCG- -5'
11597 3' -55.3 NC_003085.1 + 17905 0.72 0.342484
Target:  5'- aGUgGACUGCgucguaGACGGGugccuGCgCCCAGCg -3'
miRNA:   3'- -CAgCUGACGaug---CUGCCU-----UG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 15198 0.72 0.354214
Target:  5'- -gCGGCUGCUacgucccugugaaggGCGAgGGcccuGCCCCGGUg -3'
miRNA:   3'- caGCUGACGA---------------UGCUgCCu---UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 38672 0.72 0.359327
Target:  5'- cUCGcACcGCUGCG-CGGAAgagguggcaugcCCCCAGCg -3'
miRNA:   3'- cAGC-UGaCGAUGCuGCCUU------------GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 43363 0.71 0.37674
Target:  5'- gGUCGGCaUGCagGCGACGGAGgacuCCCUggGGCc -3'
miRNA:   3'- -CAGCUG-ACGa-UGCUGCCUU----GGGG--UCG- -5'
11597 3' -55.3 NC_003085.1 + 23455 0.71 0.394713
Target:  5'- --gGAC-GC-AUGACGGAGgCCCAGCg -3'
miRNA:   3'- cagCUGaCGaUGCUGCCUUgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 27488 0.71 0.413231
Target:  5'- cGUCGGCcUGUggaacuggacgUACGACGGcGGCgCCGGCa -3'
miRNA:   3'- -CAGCUG-ACG-----------AUGCUGCC-UUGgGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 39227 0.71 0.421738
Target:  5'- cUCGGCcagGCUACGGCGuacaacgcacucuGGGCCgCAGCa -3'
miRNA:   3'- cAGCUGa--CGAUGCUGC-------------CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 10835 0.71 0.422689
Target:  5'- -gCGACUGCgggaGugGGAugcgaGCUCCGGCc -3'
miRNA:   3'- caGCUGACGaug-CugCCU-----UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 31656 0.7 0.441988
Target:  5'- -cCGACUGCU-CGGCGGcagauuggucgGACUCgGGCg -3'
miRNA:   3'- caGCUGACGAuGCUGCC-----------UUGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 2889 0.7 0.45579
Target:  5'- aUCG-CUGCgUAUGucgggaaggaccucuACGGGGCCCCAGUc -3'
miRNA:   3'- cAGCuGACG-AUGC---------------UGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 49110 0.7 0.471843
Target:  5'- cUCG--UGCU--GACGGGGCCCCGGUg -3'
miRNA:   3'- cAGCugACGAugCUGCCUUGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.