miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11598 3' -56.4 NC_003085.1 + 37905 1.03 0.001894
Target:  5'- gCCGACGGCGCUGCCCUUC-UUCCGACg -3'
miRNA:   3'- -GGCUGCCGCGACGGGAAGaAAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 2297 0.68 0.527451
Target:  5'- uCCGgcagcACGGCGCUGgCCUgccUCgccaCCGGCc -3'
miRNA:   3'- -GGC-----UGCCGCGACgGGA---AGaaa-GGCUG- -5'
11598 3' -56.4 NC_003085.1 + 42011 0.68 0.542279
Target:  5'- cCCGGCGGCGUcggcacggacgaggGCgCCUUCUcUCCaGCc -3'
miRNA:   3'- -GGCUGCCGCGa-------------CG-GGAAGAaAGGcUG- -5'
11598 3' -56.4 NC_003085.1 + 12578 0.67 0.602743
Target:  5'- -gGACGGUggaccGCUGCUCgugg-UCCGACu -3'
miRNA:   3'- ggCUGCCG-----CGACGGGaagaaAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 21988 0.67 0.602743
Target:  5'- cCCGGCaGCGCU-CCCUUCcugcUCCaGAUg -3'
miRNA:   3'- -GGCUGcCGCGAcGGGAAGaa--AGG-CUG- -5'
11598 3' -56.4 NC_003085.1 + 23945 0.66 0.624602
Target:  5'- gCGAgGGgGCucaUGCCCUUUcccaauaucUCCGACa -3'
miRNA:   3'- gGCUgCCgCG---ACGGGAAGaa-------AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 39177 0.66 0.624602
Target:  5'- -gGACGGauguGCUGCCUUaCg--CCGGCa -3'
miRNA:   3'- ggCUGCCg---CGACGGGAaGaaaGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 3598 0.66 0.628979
Target:  5'- -aGGCGGCGaacuggcagcagguaUUGCCCgg---UCCGACa -3'
miRNA:   3'- ggCUGCCGC---------------GACGGGaagaaAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 8489 0.66 0.631169
Target:  5'- gCCGA-GGCGCUgGCCCgccaguaCGACg -3'
miRNA:   3'- -GGCUgCCGCGA-CGGGaagaaagGCUG- -5'
11598 3' -56.4 NC_003085.1 + 12293 0.68 0.516953
Target:  5'- gCGACGGCGCggugGUCCgcugggUUgCGGCg -3'
miRNA:   3'- gGCUGCCGCGa---CGGGaaga--AAgGCUG- -5'
11598 3' -56.4 NC_003085.1 + 40622 0.68 0.516953
Target:  5'- gCUGACGGcCGCUGCCgUccucgUCgccCUGACg -3'
miRNA:   3'- -GGCUGCC-GCGACGGgA-----AGaaaGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 26591 0.72 0.314871
Target:  5'- uCCGGCGGCGacacGCUCUUCU--UCGACc -3'
miRNA:   3'- -GGCUGCCGCga--CGGGAAGAaaGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 3871 0.71 0.346842
Target:  5'- gUCGACGGCGC-GCCCgccgUCUgUCgCGGu -3'
miRNA:   3'- -GGCUGCCGCGaCGGGa---AGAaAG-GCUg -5'
11598 3' -56.4 NC_003085.1 + 40375 0.7 0.381071
Target:  5'- cCCG-CGGCGCUgacGCCuCUggcgCUggCCGGCa -3'
miRNA:   3'- -GGCuGCCGCGA---CGG-GAa---GAaaGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 10457 0.7 0.40818
Target:  5'- uCCG-CGGCGCUuuggcGCCCcUCggcuggCCGACc -3'
miRNA:   3'- -GGCuGCCGCGA-----CGGGaAGaaa---GGCUG- -5'
11598 3' -56.4 NC_003085.1 + 22720 0.7 0.42691
Target:  5'- cCUGGCGGCgGCUGCCgagaagcacUCggcUCCGACa -3'
miRNA:   3'- -GGCUGCCG-CGACGGga-------AGaa-AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 46088 0.68 0.485989
Target:  5'- aCCGACGGCGa-GCCgCUgggUCggaUUCUGGCu -3'
miRNA:   3'- -GGCUGCCGCgaCGG-GA---AGa--AAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 7386 0.68 0.506539
Target:  5'- gCCGACGGCGCccGCgUgaaCUggcacgagUCCGACu -3'
miRNA:   3'- -GGCUGCCGCGa-CGgGaa-GAa-------AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 37848 0.68 0.506539
Target:  5'- cCUGGuaGCGCUGCCUgcgCUggCCGGCc -3'
miRNA:   3'- -GGCUgcCGCGACGGGaa-GAaaGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 26606 0.78 0.118188
Target:  5'- cCUGugGGCGCUGCcggacucuCCUUCgcugCCGACg -3'
miRNA:   3'- -GGCugCCGCGACG--------GGAAGaaa-GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.