miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11598 3' -56.4 NC_003085.1 + 2297 0.68 0.527451
Target:  5'- uCCGgcagcACGGCGCUGgCCUgccUCgccaCCGGCc -3'
miRNA:   3'- -GGC-----UGCCGCGACgGGA---AGaaa-GGCUG- -5'
11598 3' -56.4 NC_003085.1 + 2745 0.67 0.559391
Target:  5'- gCGAaGGCGCUGCCCaaggacuccgCUggCCGGa -3'
miRNA:   3'- gGCUgCCGCGACGGGaa--------GAaaGGCUg -5'
11598 3' -56.4 NC_003085.1 + 3103 0.7 0.407258
Target:  5'- gCCGACGGCGgaugaacUUGCCgccaUCUcgUCCGGCa -3'
miRNA:   3'- -GGCUGCCGC-------GACGGga--AGAa-AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 3598 0.66 0.628979
Target:  5'- -aGGCGGCGaacuggcagcagguaUUGCCCgg---UCCGACa -3'
miRNA:   3'- ggCUGCCGC---------------GACGGGaagaaAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 3871 0.71 0.346842
Target:  5'- gUCGACGGCGC-GCCCgccgUCUgUCgCGGu -3'
miRNA:   3'- -GGCUGCCGCGaCGGGa---AGAaAG-GCUg -5'
11598 3' -56.4 NC_003085.1 + 7386 0.68 0.506539
Target:  5'- gCCGACGGCGCccGCgUgaaCUggcacgagUCCGACu -3'
miRNA:   3'- -GGCUGCCGCGa-CGgGaa-GAa-------AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 8489 0.66 0.631169
Target:  5'- gCCGA-GGCGCUgGCCCgccaguaCGACg -3'
miRNA:   3'- -GGCUgCCGCGA-CGGGaagaaagGCUG- -5'
11598 3' -56.4 NC_003085.1 + 10457 0.7 0.40818
Target:  5'- uCCG-CGGCGCUuuggcGCCCcUCggcuggCCGACc -3'
miRNA:   3'- -GGCuGCCGCGA-----CGGGaAGaaa---GGCUG- -5'
11598 3' -56.4 NC_003085.1 + 11574 0.69 0.461867
Target:  5'- gCCGuCGGCGUggUGCCCaccagcaccUCCGACg -3'
miRNA:   3'- -GGCuGCCGCG--ACGGGaagaa----AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 12293 0.68 0.516953
Target:  5'- gCGACGGCGCggugGUCCgcugggUUgCGGCg -3'
miRNA:   3'- gGCUGCCGCGa---CGGGaaga--AAgGCUG- -5'
11598 3' -56.4 NC_003085.1 + 12578 0.67 0.602743
Target:  5'- -gGACGGUggaccGCUGCUCgugg-UCCGACu -3'
miRNA:   3'- ggCUGCCG-----CGACGGGaagaaAGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 18009 0.66 0.635547
Target:  5'- uCCGACGGCGCgagGCCgUaCgugccaUCCGu- -3'
miRNA:   3'- -GGCUGCCGCGa--CGGgAaGaa----AGGCug -5'
11598 3' -56.4 NC_003085.1 + 19828 0.71 0.363678
Target:  5'- -aGGCGGCGgaUGUCCUUCUUcauccgcucaUCCGAg -3'
miRNA:   3'- ggCUGCCGCg-ACGGGAAGAA----------AGGCUg -5'
11598 3' -56.4 NC_003085.1 + 20139 0.67 0.570162
Target:  5'- cCCG-CGGCGgUGCCCUg---UCCa-- -3'
miRNA:   3'- -GGCuGCCGCgACGGGAagaaAGGcug -5'
11598 3' -56.4 NC_003085.1 + 21362 0.66 0.613665
Target:  5'- uCUGGCGcGCGCUGCCCaagUUggugaaggCgGACa -3'
miRNA:   3'- -GGCUGC-CGCGACGGGa--AGaaa-----GgCUG- -5'
11598 3' -56.4 NC_003085.1 + 21988 0.67 0.602743
Target:  5'- cCCGGCaGCGCU-CCCUUCcugcUCCaGAUg -3'
miRNA:   3'- -GGCUGcCGCGAcGGGAAGaa--AGG-CUG- -5'
11598 3' -56.4 NC_003085.1 + 22547 0.67 0.559391
Target:  5'- gCUGACaggcauGGCGCUGCCCg-----CCGAg -3'
miRNA:   3'- -GGCUG------CCGCGACGGGaagaaaGGCUg -5'
11598 3' -56.4 NC_003085.1 + 22720 0.7 0.42691
Target:  5'- cCUGGCGGCgGCUGCCgagaagcacUCggcUCCGACa -3'
miRNA:   3'- -GGCUGCCG-CGACGGga-------AGaa-AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 23945 0.66 0.624602
Target:  5'- gCGAgGGgGCucaUGCCCUUUcccaauaucUCCGACa -3'
miRNA:   3'- gGCUgCCgCG---ACGGGAAGaa-------AGGCUG- -5'
11598 3' -56.4 NC_003085.1 + 24100 0.67 0.591846
Target:  5'- gCCGuCGGCG-UGCCCgUCaccgUCCGGa -3'
miRNA:   3'- -GGCuGCCGCgACGGGaAGaa--AGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.