Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11598 | 3' | -56.4 | NC_003085.1 | + | 49105 | 0.75 | 0.188255 |
Target: 5'- cCCGuuguCGGCGCUcaucccuugccGCCCUUCUUggCGGCg -3' miRNA: 3'- -GGCu---GCCGCGA-----------CGGGAAGAAagGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 48493 | 0.68 | 0.527452 |
Target: 5'- aCGGCGGCG-UGUCCUgcc--CCGGCa -3' miRNA: 3'- gGCUGCCGCgACGGGAagaaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 46088 | 0.68 | 0.485989 |
Target: 5'- aCCGACGGCGa-GCCgCUgggUCggaUUCUGGCu -3' miRNA: 3'- -GGCUGCCGCgaCGG-GA---AGa--AAGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 44278 | 0.7 | 0.40818 |
Target: 5'- aCCcACGGCGCcGCCCUgCcUUCCG-Cg -3' miRNA: 3'- -GGcUGCCGCGaCGGGAaGaAAGGCuG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 42603 | 0.66 | 0.624602 |
Target: 5'- gCgGACGGguagUGCUGCgCggCUUUCgCGACa -3' miRNA: 3'- -GgCUGCC----GCGACGgGaaGAAAG-GCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 42011 | 0.68 | 0.542279 |
Target: 5'- cCCGGCGGCGUcggcacggacgaggGCgCCUUCUcUCCaGCc -3' miRNA: 3'- -GGCUGCCGCGa-------------CG-GGAAGAaAGGcUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 40622 | 0.68 | 0.516953 |
Target: 5'- gCUGACGGcCGCUGCCgUccucgUCgccCUGACg -3' miRNA: 3'- -GGCUGCC-GCGACGGgA-----AGaaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 40375 | 0.7 | 0.381071 |
Target: 5'- cCCG-CGGCGCUgacGCCuCUggcgCUggCCGGCa -3' miRNA: 3'- -GGCuGCCGCGA---CGG-GAa---GAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 39177 | 0.66 | 0.624602 |
Target: 5'- -gGACGGauguGCUGCCUUaCg--CCGGCa -3' miRNA: 3'- ggCUGCCg---CGACGGGAaGaaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 37905 | 1.03 | 0.001894 |
Target: 5'- gCCGACGGCGCUGCCCUUC-UUCCGACg -3' miRNA: 3'- -GGCUGCCGCGACGGGAAGaAAGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 37848 | 0.68 | 0.506539 |
Target: 5'- cCUGGuaGCGCUGCCUgcgCUggCCGGCc -3' miRNA: 3'- -GGCUgcCGCGACGGGaa-GAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 31128 | 0.66 | 0.657416 |
Target: 5'- cCCGuaaGGCagcgcguugcgGCUGCCCUUCgga-CGGCc -3' miRNA: 3'- -GGCug-CCG-----------CGACGGGAAGaaagGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 28295 | 0.7 | 0.381071 |
Target: 5'- -gGACGGCGCUguaGCCCUccacguaccagUCcaccUUCCGGCc -3' miRNA: 3'- ggCUGCCGCGA---CGGGA-----------AGa---AAGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 26606 | 0.78 | 0.118188 |
Target: 5'- cCUGugGGCGCUGCcggacucuCCUUCgcugCCGACg -3' miRNA: 3'- -GGCugCCGCGACG--------GGAAGaaa-GGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 26591 | 0.72 | 0.314871 |
Target: 5'- uCCGGCGGCGacacGCUCUUCU--UCGACc -3' miRNA: 3'- -GGCUGCCGCga--CGGGAAGAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 25579 | 0.73 | 0.285178 |
Target: 5'- -gGACGGCuGCUGCCgUUCgcucacgccCCGACg -3' miRNA: 3'- ggCUGCCG-CGACGGgAAGaaa------GGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 24100 | 0.67 | 0.591846 |
Target: 5'- gCCGuCGGCG-UGCCCgUCaccgUCCGGa -3' miRNA: 3'- -GGCuGCCGCgACGGGaAGaa--AGGCUg -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 23945 | 0.66 | 0.624602 |
Target: 5'- gCGAgGGgGCucaUGCCCUUUcccaauaucUCCGACa -3' miRNA: 3'- gGCUgCCgCG---ACGGGAAGaa-------AGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 22720 | 0.7 | 0.42691 |
Target: 5'- cCUGGCGGCgGCUGCCgagaagcacUCggcUCCGACa -3' miRNA: 3'- -GGCUGCCG-CGACGGga-------AGaa-AGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 22547 | 0.67 | 0.559391 |
Target: 5'- gCUGACaggcauGGCGCUGCCCg-----CCGAg -3' miRNA: 3'- -GGCUG------CCGCGACGGGaagaaaGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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