Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11598 | 5' | -54.4 | NC_003085.1 | + | 37943 | 1.13 | 0.000581 |
Target: 5'- uUGAUUGAGAAUCGGGGCCCCAACGCCa -3' miRNA: 3'- -ACUAACUCUUAGCCCCGGGGUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 35063 | 0.8 | 0.126602 |
Target: 5'- ---cUGGGAGUUGGGGCCCUAGCGg- -3' miRNA: 3'- acuaACUCUUAGCCCCGGGGUUGCgg -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 32889 | 0.73 | 0.356593 |
Target: 5'- uUGGUgGAGcAUCGGGGCCguccgccuUCGACGUCg -3' miRNA: 3'- -ACUAaCUCuUAGCCCCGG--------GGUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 2903 | 0.71 | 0.439618 |
Target: 5'- ----cGGGAAggaccucuaCGGGGCCCCAgucuggAUGCCg -3' miRNA: 3'- acuaaCUCUUa--------GCCCCGGGGU------UGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 26542 | 0.71 | 0.439618 |
Target: 5'- cUGggUGGGAAcCGGaGGCUCggaGACGCCg -3' miRNA: 3'- -ACuaACUCUUaGCC-CCGGGg--UUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 346 | 0.7 | 0.490238 |
Target: 5'- cGAcUGAGcacCGGGGCCCCGucaGCa -3' miRNA: 3'- aCUaACUCuuaGCCCCGGGGUug-CGg -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 16974 | 0.7 | 0.511239 |
Target: 5'- ----cGAGAugacgcUCcGGGCCCgCGACGCCg -3' miRNA: 3'- acuaaCUCUu-----AGcCCCGGG-GUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 7336 | 0.7 | 0.490238 |
Target: 5'- cGGcUGAGGAcgCGGGcuacacgcGCCCCuggGCGCCg -3' miRNA: 3'- aCUaACUCUUa-GCCC--------CGGGGu--UGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 25730 | 0.7 | 0.479889 |
Target: 5'- ----cGAGGAUagGGGGCUCUAuCGCCg -3' miRNA: 3'- acuaaCUCUUAg-CCCCGGGGUuGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 41176 | 0.69 | 0.554281 |
Target: 5'- ---cUGGGcaa-GGGGCUCCAGCGUCc -3' miRNA: 3'- acuaACUCuuagCCCCGGGGUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 13291 | 0.69 | 0.576211 |
Target: 5'- ----cGAacAUCGGaGGCCCCAGCgaGCCc -3' miRNA: 3'- acuaaCUcuUAGCC-CCGGGGUUG--CGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 9200 | 0.69 | 0.554281 |
Target: 5'- aGGUUGuAGGGgggCGGGacguagGCCCCGGCGgCg -3' miRNA: 3'- aCUAAC-UCUUa--GCCC------CGGGGUUGCgG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 11513 | 0.68 | 0.608326 |
Target: 5'- aGAU--GGcGUUGGGGCCCCGAUucucaaucaacagGCCc -3' miRNA: 3'- aCUAacUCuUAGCCCCGGGGUUG-------------CGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 36841 | 0.68 | 0.609438 |
Target: 5'- aGAUUGucAGAAUccagcgccCGGGGCgCCAcgcGCGUCa -3' miRNA: 3'- aCUAAC--UCUUA--------GCCCCGgGGU---UGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 15336 | 0.68 | 0.618339 |
Target: 5'- cGAUUGcaaccauacuGGuaacugcaugCGGuGGCCCUGACGCCa -3' miRNA: 3'- aCUAAC----------UCuua-------GCC-CCGGGGUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 2140 | 0.68 | 0.642843 |
Target: 5'- ----cGAGGA-CGGcGGCCCC--CGCCu -3' miRNA: 3'- acuaaCUCUUaGCC-CCGGGGuuGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 49097 | 0.68 | 0.591679 |
Target: 5'- cGAg-GAGGGgccccucgugcugaCGGGGCCCCggUGCUc -3' miRNA: 3'- aCUaaCUCUUa-------------GCCCCGGGGuuGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 36161 | 0.68 | 0.642843 |
Target: 5'- gUGGUUGaAGGGcucgcUGGGGCCuCCGAuguuCGCCg -3' miRNA: 3'- -ACUAAC-UCUUa----GCCCCGG-GGUU----GCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 11818 | 0.67 | 0.676157 |
Target: 5'- ----------cCGGGuGCCCCGACGCUg -3' miRNA: 3'- acuaacucuuaGCCC-CGGGGUUGCGG- -5' |
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11598 | 5' | -54.4 | NC_003085.1 | + | 4110 | 0.67 | 0.676157 |
Target: 5'- ---cUG-GAGUUGGGcGCCgcgcugggacuCCAGCGCCg -3' miRNA: 3'- acuaACuCUUAGCCC-CGG-----------GGUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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