miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11598 5' -54.4 NC_003085.1 + 49097 0.68 0.591679
Target:  5'- cGAg-GAGGGgccccucgugcugaCGGGGCCCCggUGCUc -3'
miRNA:   3'- aCUaaCUCUUa-------------GCCCCGGGGuuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 13291 0.69 0.576211
Target:  5'- ----cGAacAUCGGaGGCCCCAGCgaGCCc -3'
miRNA:   3'- acuaaCUcuUAGCC-CCGGGGUUG--CGG- -5'
11598 5' -54.4 NC_003085.1 + 9200 0.69 0.554281
Target:  5'- aGGUUGuAGGGgggCGGGacguagGCCCCGGCGgCg -3'
miRNA:   3'- aCUAAC-UCUUa--GCCC------CGGGGUUGCgG- -5'
11598 5' -54.4 NC_003085.1 + 41176 0.69 0.554281
Target:  5'- ---cUGGGcaa-GGGGCUCCAGCGUCc -3'
miRNA:   3'- acuaACUCuuagCCCCGGGGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 16974 0.7 0.511239
Target:  5'- ----cGAGAugacgcUCcGGGCCCgCGACGCCg -3'
miRNA:   3'- acuaaCUCUu-----AGcCCCGGG-GUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 346 0.7 0.490238
Target:  5'- cGAcUGAGcacCGGGGCCCCGucaGCa -3'
miRNA:   3'- aCUaACUCuuaGCCCCGGGGUug-CGg -5'
11598 5' -54.4 NC_003085.1 + 7336 0.7 0.490238
Target:  5'- cGGcUGAGGAcgCGGGcuacacgcGCCCCuggGCGCCg -3'
miRNA:   3'- aCUaACUCUUa-GCCC--------CGGGGu--UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 25730 0.7 0.479889
Target:  5'- ----cGAGGAUagGGGGCUCUAuCGCCg -3'
miRNA:   3'- acuaaCUCUUAg-CCCCGGGGUuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 26542 0.71 0.439618
Target:  5'- cUGggUGGGAAcCGGaGGCUCggaGACGCCg -3'
miRNA:   3'- -ACuaACUCUUaGCC-CCGGGg--UUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 2903 0.71 0.439618
Target:  5'- ----cGGGAAggaccucuaCGGGGCCCCAgucuggAUGCCg -3'
miRNA:   3'- acuaaCUCUUa--------GCCCCGGGGU------UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 32889 0.73 0.356593
Target:  5'- uUGGUgGAGcAUCGGGGCCguccgccuUCGACGUCg -3'
miRNA:   3'- -ACUAaCUCuUAGCCCCGG--------GGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 35063 0.8 0.126602
Target:  5'- ---cUGGGAGUUGGGGCCCUAGCGg- -3'
miRNA:   3'- acuaACUCUUAGCCCCGGGGUUGCgg -5'
11598 5' -54.4 NC_003085.1 + 37943 1.13 0.000581
Target:  5'- uUGAUUGAGAAUCGGGGCCCCAACGCCa -3'
miRNA:   3'- -ACUAACUCUUAGCCCCGGGGUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.