Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11599 | 3' | -52.7 | NC_003085.1 | + | 27831 | 0.66 | 0.773377 |
Target: 5'- aUGCAACUCcacccaGAGgACAACGCa -3' miRNA: 3'- aACGUUGAGagcug-CUCgUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 11739 | 0.67 | 0.707968 |
Target: 5'- gUGguGCUgUCGAgGGGCAUGacACGCg -3' miRNA: 3'- aACguUGAgAGCUgCUCGUGU--UGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 48511 | 0.67 | 0.707968 |
Target: 5'- cUGCGACcuccuUCUCGGCG-GCGagGGCGCg -3' miRNA: 3'- aACGUUG-----AGAGCUGCuCGUg-UUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 48931 | 0.67 | 0.741212 |
Target: 5'- -cGCcaaUCUCcGCGAGgGCAGCGCg -3' miRNA: 3'- aaCGuugAGAGcUGCUCgUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 9405 | 0.66 | 0.750991 |
Target: 5'- -cGCGGCUaaaGGCGAGCaucuuucccuaccACGACGCg -3' miRNA: 3'- aaCGUUGAgagCUGCUCG-------------UGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 25250 | 0.66 | 0.761731 |
Target: 5'- gUGC-GCUCcgCGGCGGGCGucgucguCGGCGCg -3' miRNA: 3'- aACGuUGAGa-GCUGCUCGU-------GUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 39644 | 0.66 | 0.762798 |
Target: 5'- -cGCAACUUcgCGACGAcaccgaGCGGCGCg -3' miRNA: 3'- aaCGUUGAGa-GCUGCUcg----UGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 8918 | 0.66 | 0.772327 |
Target: 5'- cUUGC-GC-CUCGACGccuccgaAGUGCAGCGCg -3' miRNA: 3'- -AACGuUGaGAGCUGC-------UCGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 39028 | 0.66 | 0.773377 |
Target: 5'- -gGCGACggcaugCgUgGGCGAGCGCuGCGCg -3' miRNA: 3'- aaCGUUGa-----G-AgCUGCUCGUGuUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 15132 | 0.67 | 0.696707 |
Target: 5'- -cGCcGCguggugCGACGAGCACGagACGCa -3' miRNA: 3'- aaCGuUGaga---GCUGCUCGUGU--UGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 28149 | 0.68 | 0.673994 |
Target: 5'- -cGCuGCUCUCuGA-GAGUGCGACGCc -3' miRNA: 3'- aaCGuUGAGAG-CUgCUCGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 45826 | 0.68 | 0.673994 |
Target: 5'- gUGCAGCgucccUCUCGGCcAGCcagucGCGGCGCa -3' miRNA: 3'- aACGUUG-----AGAGCUGcUCG-----UGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 33140 | 0.75 | 0.297479 |
Target: 5'- -cGCAgGCUCUCGACcAGUACGugGCg -3' miRNA: 3'- aaCGU-UGAGAGCUGcUCGUGUugCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 36805 | 0.72 | 0.451355 |
Target: 5'- -aGCGucuccACUC-CGGCGAGCGCGacACGCa -3' miRNA: 3'- aaCGU-----UGAGaGCUGCUCGUGU--UGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 2290 | 0.71 | 0.504268 |
Target: 5'- -cGCgGGCUC-CGGC-AGCACGGCGCUg -3' miRNA: 3'- aaCG-UUGAGaGCUGcUCGUGUUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 38226 | 0.7 | 0.537273 |
Target: 5'- gUGC-ACUCUCGACGgcAGCACGucgGCGgUg -3' miRNA: 3'- aACGuUGAGAGCUGC--UCGUGU---UGCgA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 2080 | 0.69 | 0.593759 |
Target: 5'- -gGUGACg--CGACGAGCGCAGcCGCc -3' miRNA: 3'- aaCGUUGagaGCUGCUCGUGUU-GCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 30531 | 0.69 | 0.6052 |
Target: 5'- -gGCGGCg--CGugGAGCACAGCagGCg -3' miRNA: 3'- aaCGUUGagaGCugCUCGUGUUG--CGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 13241 | 0.68 | 0.639632 |
Target: 5'- gUGCAACUCgaugaCGuuCGAGCaguaccagcagGCAGCGCUc -3' miRNA: 3'- aACGUUGAGa----GCu-GCUCG-----------UGUUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 30781 | 0.68 | 0.673994 |
Target: 5'- -cGCGAC-CUCGACcggaagagccguGAGCGCGcCGCa -3' miRNA: 3'- aaCGUUGaGAGCUG------------CUCGUGUuGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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