Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11599 | 3' | -52.7 | NC_003085.1 | + | 13241 | 0.68 | 0.639632 |
Target: 5'- gUGCAACUCgaugaCGuuCGAGCaguaccagcagGCAGCGCUc -3' miRNA: 3'- aACGUUGAGa----GCu-GCUCG-----------UGUUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 30781 | 0.68 | 0.673994 |
Target: 5'- -cGCGAC-CUCGACcggaagagccguGAGCGCGcCGCa -3' miRNA: 3'- aaCGUUGaGAGCUG------------CUCGUGUuGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 45826 | 0.68 | 0.673994 |
Target: 5'- gUGCAGCgucccUCUCGGCcAGCcagucGCGGCGCa -3' miRNA: 3'- aACGUUG-----AGAGCUGcUCG-----UGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 28149 | 0.68 | 0.673994 |
Target: 5'- -cGCuGCUCUCuGA-GAGUGCGACGCc -3' miRNA: 3'- aaCGuUGAGAG-CUgCUCGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 35162 | 0.69 | 0.6052 |
Target: 5'- -gGCGACUCUuacUGAgGGcuGCGCGGCGCUu -3' miRNA: 3'- aaCGUUGAGA---GCUgCU--CGUGUUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 3382 | 0.69 | 0.593759 |
Target: 5'- -aGCGGCUCgccgUCGGuaAGCGCGACGCg -3' miRNA: 3'- aaCGUUGAG----AGCUgcUCGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 25224 | 0.7 | 0.552934 |
Target: 5'- cUGCAGCaUCUccaacccgcugaugaCGACGGGCACcGCGUa -3' miRNA: 3'- aACGUUG-AGA---------------GCUGCUCGUGuUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 8800 | 0.7 | 0.515178 |
Target: 5'- -gGCGGCUCcgCGAgGuuGCGCGGCGCa -3' miRNA: 3'- aaCGUUGAGa-GCUgCu-CGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 1487 | 0.68 | 0.685378 |
Target: 5'- -cGCGACUugCUCGACGcGGCccgucCGGCGCUc -3' miRNA: 3'- aaCGUUGA--GAGCUGC-UCGu----GUUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 29308 | 0.68 | 0.685378 |
Target: 5'- cUGCAACuUCUCGuuguacugguaGCGGuagcuGCGCAGCGCc -3' miRNA: 3'- aACGUUG-AGAGC-----------UGCU-----CGUGUUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 45367 | 0.67 | 0.696707 |
Target: 5'- --cCAACUCcagCGGCGAGUGCgGGCGCUc -3' miRNA: 3'- aacGUUGAGa--GCUGCUCGUG-UUGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 45200 | 0.66 | 0.752071 |
Target: 5'- cUGCGACUaCUUGAgGccaAGCGCGcgaaGCGCUg -3' miRNA: 3'- aACGUUGA-GAGCUgC---UCGUGU----UGCGA- -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 10672 | 0.66 | 0.762798 |
Target: 5'- -aGCGACagCgcagCGACGAGgGCgAGCGCa -3' miRNA: 3'- aaCGUUGa-Ga---GCUGCUCgUG-UUGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 45589 | 0.66 | 0.794048 |
Target: 5'- -cGCGACagaCGGCGGGCGCGccgucgACGCg -3' miRNA: 3'- aaCGUUGagaGCUGCUCGUGU------UGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 40250 | 0.66 | 0.804114 |
Target: 5'- -cGCGGCUUcccgCGGCGAaCACAggGCGCa -3' miRNA: 3'- aaCGUUGAGa---GCUGCUcGUGU--UGCGa -5' |
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11599 | 3' | -52.7 | NC_003085.1 | + | 10839 | 0.74 | 0.346766 |
Target: 5'- -aGCGGCUUgagcguccCGACGAGCACGGCGgUg -3' miRNA: 3'- aaCGUUGAGa-------GCUGCUCGUGUUGCgA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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