miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11599 3' -52.7 NC_003085.1 + 45826 0.68 0.673994
Target:  5'- gUGCAGCgucccUCUCGGCcAGCcagucGCGGCGCa -3'
miRNA:   3'- aACGUUG-----AGAGCUGcUCG-----UGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 30781 0.68 0.673994
Target:  5'- -cGCGAC-CUCGACcggaagagccguGAGCGCGcCGCa -3'
miRNA:   3'- aaCGUUGaGAGCUG------------CUCGUGUuGCGa -5'
11599 3' -52.7 NC_003085.1 + 28149 0.68 0.673994
Target:  5'- -cGCuGCUCUCuGA-GAGUGCGACGCc -3'
miRNA:   3'- aaCGuUGAGAG-CUgCUCGUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 13241 0.68 0.639632
Target:  5'- gUGCAACUCgaugaCGuuCGAGCaguaccagcagGCAGCGCUc -3'
miRNA:   3'- aACGUUGAGa----GCu-GCUCG-----------UGUUGCGA- -5'
11599 3' -52.7 NC_003085.1 + 30531 0.69 0.6052
Target:  5'- -gGCGGCg--CGugGAGCACAGCagGCg -3'
miRNA:   3'- aaCGUUGagaGCugCUCGUGUUG--CGa -5'
11599 3' -52.7 NC_003085.1 + 35162 0.69 0.6052
Target:  5'- -gGCGACUCUuacUGAgGGcuGCGCGGCGCUu -3'
miRNA:   3'- aaCGUUGAGA---GCUgCU--CGUGUUGCGA- -5'
11599 3' -52.7 NC_003085.1 + 2080 0.69 0.593759
Target:  5'- -gGUGACg--CGACGAGCGCAGcCGCc -3'
miRNA:   3'- aaCGUUGagaGCUGCUCGUGUU-GCGa -5'
11599 3' -52.7 NC_003085.1 + 3382 0.69 0.593759
Target:  5'- -aGCGGCUCgccgUCGGuaAGCGCGACGCg -3'
miRNA:   3'- aaCGUUGAG----AGCUgcUCGUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 25224 0.7 0.552934
Target:  5'- cUGCAGCaUCUccaacccgcugaugaCGACGGGCACcGCGUa -3'
miRNA:   3'- aACGUUG-AGA---------------GCUGCUCGUGuUGCGa -5'
11599 3' -52.7 NC_003085.1 + 38226 0.7 0.537273
Target:  5'- gUGC-ACUCUCGACGgcAGCACGucgGCGgUg -3'
miRNA:   3'- aACGuUGAGAGCUGC--UCGUGU---UGCgA- -5'
11599 3' -52.7 NC_003085.1 + 8800 0.7 0.515178
Target:  5'- -gGCGGCUCcgCGAgGuuGCGCGGCGCa -3'
miRNA:   3'- aaCGUUGAGa-GCUgCu-CGUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 2290 0.71 0.504268
Target:  5'- -cGCgGGCUC-CGGC-AGCACGGCGCUg -3'
miRNA:   3'- aaCG-UUGAGaGCUGcUCGUGUUGCGA- -5'
11599 3' -52.7 NC_003085.1 + 36805 0.72 0.451355
Target:  5'- -aGCGucuccACUC-CGGCGAGCGCGacACGCa -3'
miRNA:   3'- aaCGU-----UGAGaGCUGCUCGUGU--UGCGa -5'
11599 3' -52.7 NC_003085.1 + 10839 0.74 0.346766
Target:  5'- -aGCGGCUUgagcguccCGACGAGCACGGCGgUg -3'
miRNA:   3'- aaCGUUGAGa-------GCUGCUCGUGUUGCgA- -5'
11599 3' -52.7 NC_003085.1 + 33140 0.75 0.297479
Target:  5'- -cGCAgGCUCUCGACcAGUACGugGCg -3'
miRNA:   3'- aaCGU-UGAGAGCUGcUCGUGUugCGa -5'
11599 3' -52.7 NC_003085.1 + 38580 1.05 0.002463
Target:  5'- gUUGCAACUCUCGACGAGCACAACGCUu -3'
miRNA:   3'- -AACGUUGAGAGCUGCUCGUGUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.