Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11599 | 5' | -60.4 | NC_003085.1 | + | 38614 | 1.11 | 0.000217 |
Target: 5'- uGCACCGCCGUGCUCGUCGGGACGCUCa -3' miRNA: 3'- -CGUGGCGGCACGAGCAGCCCUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 25238 | 0.66 | 0.431901 |
Target: 5'- gGCGCCGCCcugGUGCgcuccgcggcgggcgUCGUCGucGGCGCg- -3' miRNA: 3'- -CGUGGCGG---CACG---------------AGCAGCc-CUGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 26876 | 0.66 | 0.418985 |
Target: 5'- cGCACCuGCCGgcGC-CGgUGGGugGaCUCa -3' miRNA: 3'- -CGUGG-CGGCa-CGaGCaGCCCugC-GAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 25776 | 0.66 | 0.418985 |
Target: 5'- gGCAaguCCGaCGUGCagGUgGGGACGC-Cg -3' miRNA: 3'- -CGU---GGCgGCACGagCAgCCCUGCGaG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 9207 | 0.67 | 0.400946 |
Target: 5'- uGCGCC-CUGUGUUCGccgCGGGAagcCGCg- -3' miRNA: 3'- -CGUGGcGGCACGAGCa--GCCCU---GCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 20001 | 0.67 | 0.383411 |
Target: 5'- -uGCCGCCGUcgUCGUgGGGcCGCa- -3' miRNA: 3'- cgUGGCGGCAcgAGCAgCCCuGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 28364 | 0.68 | 0.341855 |
Target: 5'- gGCACCGCCGUGgcgcggaccguaCUUGUCGGaaucGACaucCUCu -3' miRNA: 3'- -CGUGGCGGCAC------------GAGCAGCC----CUGc--GAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 23349 | 0.68 | 0.341855 |
Target: 5'- aGCGCCGCCG-GC-CGcCGaGGCGCa- -3' miRNA: 3'- -CGUGGCGGCaCGaGCaGCcCUGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 42720 | 0.68 | 0.333944 |
Target: 5'- gGCACCucaGgCGUGggCGUCGGGGCGaugCg -3' miRNA: 3'- -CGUGG---CgGCACgaGCAGCCCUGCga-G- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 3295 | 0.69 | 0.28235 |
Target: 5'- cCGCCuaCGUGUcauUCGaacUCGGGACGCUg -3' miRNA: 3'- cGUGGcgGCACG---AGC---AGCCCUGCGAg -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 7287 | 0.74 | 0.123009 |
Target: 5'- cGCACCGCCGccaaGCUCGaCGGGAaGuCUCc -3' miRNA: 3'- -CGUGGCGGCa---CGAGCaGCCCUgC-GAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 39480 | 0.72 | 0.17412 |
Target: 5'- -uGCCGaCGUGCgCGUCGaGGCGCUCg -3' miRNA: 3'- cgUGGCgGCACGaGCAGCcCUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 40630 | 0.71 | 0.214329 |
Target: 5'- cCGCUGCCGUcCUCGUCGcccuGACGCUg -3' miRNA: 3'- cGUGGCGGCAcGAGCAGCc---CUGCGAg -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 11085 | 0.7 | 0.239682 |
Target: 5'- uGCACCGCCaggagucugcgccgaGUGacuucuccgccUUCGUUGGGGCGCg- -3' miRNA: 3'- -CGUGGCGG---------------CAC-----------GAGCAGCCCUGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 3636 | 0.7 | 0.243327 |
Target: 5'- uGCACCGUCGaUGCUCGguggcagaCGGaGugGCa- -3' miRNA: 3'- -CGUGGCGGC-ACGAGCa-------GCC-CugCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 38138 | 0.7 | 0.243327 |
Target: 5'- uCGCCGCCcUGCUggCGUUGGugguGGCGCUCc -3' miRNA: 3'- cGUGGCGGcACGA--GCAGCC----CUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 27839 | 0.74 | 0.133401 |
Target: 5'- uGCGCCaugGCCGU-CUCGcgCGGGuCGCUCg -3' miRNA: 3'- -CGUGG---CGGCAcGAGCa-GCCCuGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 28950 | 0.67 | 0.400946 |
Target: 5'- uGCGCggaGUCGcGCUCGUCGcGGuacCGCUUg -3' miRNA: 3'- -CGUGg--CGGCaCGAGCAGC-CCu--GCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 8637 | 0.67 | 0.374836 |
Target: 5'- -gGCCGCCGUcagguacagGC-CGgcCGGGACGCg- -3' miRNA: 3'- cgUGGCGGCA---------CGaGCa-GCCCUGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 24257 | 0.67 | 0.374836 |
Target: 5'- gGUACCaGCCGUacuGCUCGgCGacguuGGCGCUCa -3' miRNA: 3'- -CGUGG-CGGCA---CGAGCaGCc----CUGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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