Results 41 - 60 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11600 | 3' | -53 | NC_003085.1 | + | 15211 | 0.67 | 0.748405 |
Target: 5'- cGCGCcGCggaagugGGCGAgGUGGaCUUgCGCCa -3' miRNA: 3'- aCGUGuUGa------CUGUUgCGCC-GAA-GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 42520 | 0.67 | 0.748405 |
Target: 5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3' miRNA: 3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 25615 | 0.67 | 0.715902 |
Target: 5'- aGCGCGACgaggaggaGACGACGaaGGCcgggCGCCc -3' miRNA: 3'- aCGUGUUGa-------CUGUUGCg-CCGaa--GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 48848 | 0.67 | 0.759007 |
Target: 5'- aGCACAACccGccguaggccGCGACG-GGCUugcagUCGCCg -3' miRNA: 3'- aCGUGUUGa-C---------UGUUGCgCCGA-----AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 32141 | 0.67 | 0.759007 |
Target: 5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3' miRNA: 3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 40879 | 0.67 | 0.737679 |
Target: 5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3' miRNA: 3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 29168 | 0.67 | 0.737679 |
Target: 5'- gGCGCGuugGGCAcgGCcuugGGCUUCGCCu -3' miRNA: 3'- aCGUGUugaCUGUugCG----CCGAAGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 45741 | 0.67 | 0.726841 |
Target: 5'- cGguCAuGCUGACGccucGCGUGGCacgUCGCg -3' miRNA: 3'- aCguGU-UGACUGU----UGCGCCGa--AGCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 35180 | 0.67 | 0.726841 |
Target: 5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3' miRNA: 3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 3081 | 0.67 | 0.726841 |
Target: 5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3' miRNA: 3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 8836 | 0.67 | 0.759007 |
Target: 5'- aGgGCGACgagGACGGCaGCGGC--CGUCa -3' miRNA: 3'- aCgUGUUGa--CUGUUG-CGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 34177 | 0.67 | 0.748405 |
Target: 5'- gGC-CAGCaUGACGcggGCGCGGCgggugagcUCgGCCg -3' miRNA: 3'- aCGuGUUG-ACUGU---UGCGCCGa-------AG-CGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 12501 | 0.67 | 0.748405 |
Target: 5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3' miRNA: 3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 45582 | 0.67 | 0.737679 |
Target: 5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3' miRNA: 3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 24438 | 0.67 | 0.715903 |
Target: 5'- cGCGCGGgUGAUggUGCccaGCggCGCCu -3' miRNA: 3'- aCGUGUUgACUGuuGCGc--CGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 5180 | 0.68 | 0.6714 |
Target: 5'- gGCGCGGaaGGCAGgGCGGCgcCGUg -3' miRNA: 3'- aCGUGUUgaCUGUUgCGCCGaaGCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 21684 | 0.68 | 0.6714 |
Target: 5'- aGCGCcuCcagGACGAgGUGGCccgcUUCGCCu -3' miRNA: 3'- aCGUGuuGa--CUGUUgCGCCG----AAGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 42560 | 0.68 | 0.692663 |
Target: 5'- cGCGCGggcgaggGCUGAC-GCGaUGGCcucaaugUCGCCg -3' miRNA: 3'- aCGUGU-------UGACUGuUGC-GCCGa------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 8116 | 0.68 | 0.687086 |
Target: 5'- aGUugGgcGCUGAUGACGUGGUggaccugcucaagCGCCg -3' miRNA: 3'- aCGugU--UGACUGUUGCGCCGaa-----------GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 41459 | 0.68 | 0.6714 |
Target: 5'- cGCGCAagGCUGG-GGCGCGGgUgaaguaccgCGCCa -3' miRNA: 3'- aCGUGU--UGACUgUUGCGCCgAa--------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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