miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 1328 0.66 0.799923
Target:  5'- gGCACuGC-GAUGGCGCuggaguacggacGGCUUcCGCCu -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG------------CCGAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 38085 0.66 0.779788
Target:  5'- aGCGCuccacccacuuGCUGACggUGUccuGGCUgaCGCCg -3'
miRNA:   3'- aCGUGu----------UGACUGuuGCG---CCGAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 33367 0.66 0.799923
Target:  5'- gGCGgGACaGACAcCGCGcGCUcaGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUuGCGC-CGAagCGG- -5'
11600 3' -53 NC_003085.1 + 8024 0.66 0.809719
Target:  5'- cGCGCcAACUcGACGgagaGCGUauGGCUgUUGCCg -3'
miRNA:   3'- aCGUG-UUGA-CUGU----UGCG--CCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 4326 0.66 0.779788
Target:  5'- cUGCACcuCUucgucGACGACGaCGGCaaUGCCu -3'
miRNA:   3'- -ACGUGuuGA-----CUGUUGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 40688 0.66 0.819319
Target:  5'- gGCGCAGgggGACGACGUccgGGUgcuggacgCGCCg -3'
miRNA:   3'- aCGUGUUga-CUGUUGCG---CCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 18772 0.66 0.809719
Target:  5'- cGgGCGAUgGACAAagcgaagGCGGCUgUCGCUg -3'
miRNA:   3'- aCgUGUUGaCUGUUg------CGCCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 8515 0.66 0.799923
Target:  5'- cGCGCAccagcgggcGCaGGCGAagGCGGUgaCGCCa -3'
miRNA:   3'- aCGUGU---------UGaCUGUUg-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 25615 0.67 0.715902
Target:  5'- aGCGCGACgaggaggaGACGACGaaGGCcgggCGCCc -3'
miRNA:   3'- aCGUGUUGa-------CUGUUGCg-CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 10305 0.67 0.715902
Target:  5'- gGUcCGGCUGuggaacgaauGCGAUGCGGCcccCGCCa -3'
miRNA:   3'- aCGuGUUGAC----------UGUUGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 24204 0.67 0.715902
Target:  5'- aGUACGcGCUGAagcaguACGCGGUgcccgUCGUCa -3'
miRNA:   3'- aCGUGU-UGACUgu----UGCGCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 25427 0.67 0.72684
Target:  5'- gGCaACGGCUGAgCAGCacugaGCGGCg--GCCg -3'
miRNA:   3'- aCG-UGUUGACU-GUUG-----CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 28857 0.67 0.72684
Target:  5'- cGCGCcGCccGACuucCGCGGCgcUGCCg -3'
miRNA:   3'- aCGUGuUGa-CUGuu-GCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 42520 0.67 0.748405
Target:  5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3'
miRNA:   3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 28507 0.67 0.757953
Target:  5'- cGCGCcauucaggcggugGACgcgucagGGCGAaucCGCGGCgucgUCGCCu -3'
miRNA:   3'- aCGUG-------------UUGa------CUGUU---GCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 16083 0.67 0.759007
Target:  5'- uUGCgACAgugGCUGAgcGCGCGGUgucuguccCGCCa -3'
miRNA:   3'- -ACG-UGU---UGACUguUGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 32141 0.67 0.759007
Target:  5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.