miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 4205 0.69 0.648868
Target:  5'- gGaCGCcGCUGAC-GCGCGGCggguuaCGCUg -3'
miRNA:   3'- aC-GUGuUGACUGuUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 4326 0.66 0.779788
Target:  5'- cUGCACcuCUucgucGACGACGaCGGCaaUGCCu -3'
miRNA:   3'- -ACGUGuuGA-----CUGUUGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 5180 0.68 0.6714
Target:  5'- gGCGCGGaaGGCAGgGCGGCgcCGUg -3'
miRNA:   3'- aCGUGUUgaCUGUUgCGCCGaaGCGg -5'
11600 3' -53 NC_003085.1 + 5478 0.71 0.493761
Target:  5'- aGUugGagGCgGACAACGCGGCgugggGCCg -3'
miRNA:   3'- aCGugU--UGaCUGUUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5'
11600 3' -53 NC_003085.1 + 7328 0.74 0.349093
Target:  5'- cGCggagGCGGCUGAgGACGCGgGCUacacgCGCCc -3'
miRNA:   3'- aCG----UGUUGACUgUUGCGC-CGAa----GCGG- -5'
11600 3' -53 NC_003085.1 + 7815 0.7 0.58122
Target:  5'- gGCACAGCaccagGugAGCgGCGGCcaaGCCu -3'
miRNA:   3'- aCGUGUUGa----CugUUG-CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 8024 0.66 0.809719
Target:  5'- cGCGCcAACUcGACGgagaGCGUauGGCUgUUGCCg -3'
miRNA:   3'- aCGUG-UUGA-CUGU----UGCG--CCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 8116 0.68 0.687086
Target:  5'- aGUugGgcGCUGAUGACGUGGUggaccugcucaagCGCCg -3'
miRNA:   3'- aCGugU--UGACUGUUGCGCCGaa-----------GCGG- -5'
11600 3' -53 NC_003085.1 + 8459 0.7 0.570046
Target:  5'- -cCACGGCgaUGACGACGCcGCUggGCCa -3'
miRNA:   3'- acGUGUUG--ACUGUUGCGcCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 8515 0.66 0.799923
Target:  5'- cGCGCAccagcgggcGCaGGCGAagGCGGUgaCGCCa -3'
miRNA:   3'- aCGUGU---------UGaCUGUUg-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 8536 0.68 0.660148
Target:  5'- gGCACcuCUcGGC-GCGCGGCgagcUCGUCa -3'
miRNA:   3'- aCGUGuuGA-CUGuUGCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 8836 0.67 0.759007
Target:  5'- aGgGCGACgagGACGGCaGCGGC--CGUCa -3'
miRNA:   3'- aCgUGUUGa--CUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 9024 0.66 0.819319
Target:  5'- cGUAgGGCUgGACGGCGgcaGGCagcgCGCCu -3'
miRNA:   3'- aCGUgUUGA-CUGUUGCg--CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 9101 0.75 0.324014
Target:  5'- aGCGCcGCgGGCAGCaGCGGCUU-GCCc -3'
miRNA:   3'- aCGUGuUGaCUGUUG-CGCCGAAgCGG- -5'
11600 3' -53 NC_003085.1 + 9544 0.72 0.442233
Target:  5'- gUGCACGACgcgGcCGACGCugGGCUUCuGCa -3'
miRNA:   3'- -ACGUGUUGa--CuGUUGCG--CCGAAG-CGg -5'
11600 3' -53 NC_003085.1 + 10057 0.72 0.472801
Target:  5'- cGCGCGACUGACA---CGGCUgggUUGCUu -3'
miRNA:   3'- aCGUGUUGACUGUugcGCCGA---AGCGG- -5'
11600 3' -53 NC_003085.1 + 10305 0.67 0.715902
Target:  5'- gGUcCGGCUGuggaacgaauGCGAUGCGGCcccCGCCa -3'
miRNA:   3'- aCGuGUUGAC----------UGUUGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 10616 0.75 0.315958
Target:  5'- cGCGCGccgucGCaguggGACGACGCGGCagugCGCCc -3'
miRNA:   3'- aCGUGU-----UGa----CUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 10667 0.66 0.819319
Target:  5'- gGCugAGC-GACAGCGCagcgacgagGGCgagCGCa -3'
miRNA:   3'- aCGugUUGaCUGUUGCG---------CCGaa-GCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.