miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 1010 0.73 0.384632
Target:  5'- gGCugAGgUGGCcuaugcuCGCGGCcUCGCCg -3'
miRNA:   3'- aCGugUUgACUGuu-----GCGCCGaAGCGG- -5'
11600 3' -53 NC_003085.1 + 37110 0.73 0.412812
Target:  5'- gGCACAGC-GACAccAUGUGGCgcgUGCCc -3'
miRNA:   3'- aCGUGUUGaCUGU--UGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 48773 0.72 0.432293
Target:  5'- uUGCcccgugGCGACUGGCGGCGCuuCUUCGCg -3'
miRNA:   3'- -ACG------UGUUGACUGUUGCGccGAAGCGg -5'
11600 3' -53 NC_003085.1 + 1965 0.72 0.432293
Target:  5'- cGCAgUGGCgGACAcggaACGCGGCagCGCCa -3'
miRNA:   3'- aCGU-GUUGaCUGU----UGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 9544 0.72 0.442233
Target:  5'- gUGCACGACgcgGcCGACGCugGGCUUCuGCa -3'
miRNA:   3'- -ACGUGUUGa--CuGUUGCG--CCGAAG-CGg -5'
11600 3' -53 NC_003085.1 + 3348 0.72 0.459421
Target:  5'- uUGCGCGACgcauggGugAGCcagaauccgacccaGCGGCU-CGCCg -3'
miRNA:   3'- -ACGUGUUGa-----CugUUG--------------CGCCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 39642 0.72 0.462491
Target:  5'- gGCGCAACUucgcGACGACaccgaGCGGCgcgCGCg -3'
miRNA:   3'- aCGUGUUGA----CUGUUG-----CGCCGaa-GCGg -5'
11600 3' -53 NC_003085.1 + 17842 0.72 0.462491
Target:  5'- gGCACGACUucaGGCccCGCGGCcggUGCCu -3'
miRNA:   3'- aCGUGUUGA---CUGuuGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 47722 0.72 0.462491
Target:  5'- cUGCGCcuGCUGACgGGCGCGGUgcgcguagcgUCGCa -3'
miRNA:   3'- -ACGUGu-UGACUG-UUGCGCCGa---------AGCGg -5'
11600 3' -53 NC_003085.1 + 10057 0.72 0.472801
Target:  5'- cGCGCGACUGACA---CGGCUgggUUGCUu -3'
miRNA:   3'- aCGUGUUGACUGUugcGCCGA---AGCGG- -5'
11600 3' -53 NC_003085.1 + 24266 0.71 0.493761
Target:  5'- cGUACuGCUcGGCGACGuUGGCgcucaUCGCCa -3'
miRNA:   3'- aCGUGuUGA-CUGUUGC-GCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 5478 0.71 0.493761
Target:  5'- aGUugGagGCgGACAACGCGGCgugggGCCg -3'
miRNA:   3'- aCGugU--UGaCUGUUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 44788 0.71 0.504399
Target:  5'- gGCGCAACUcGGCGcCGUgaaaGGCU-CGCCu -3'
miRNA:   3'- aCGUGUUGA-CUGUuGCG----CCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 12288 0.71 0.515135
Target:  5'- cGCAC-GC-GACGGCGCGGUggucCGCUg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 1564 0.71 0.525963
Target:  5'- gUGCGCGucgcCUGcaguuGCGGCGCGGCguacgcgUGCCg -3'
miRNA:   3'- -ACGUGUu---GAC-----UGUUGCGCCGaa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 17995 0.7 0.536875
Target:  5'- gGCACGgaGCUgcGAgAGCGCGGaCUggCGCCc -3'
miRNA:   3'- aCGUGU--UGA--CUgUUGCGCC-GAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 12040 0.7 0.536875
Target:  5'- cUGCGCGACUucguGCGCcGCUUCGCg -3'
miRNA:   3'- -ACGUGUUGAcuguUGCGcCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 15158 0.7 0.537971
Target:  5'- cGCACuacugcccccucugcGCUGACGGCcCGGCUgagccggugCGCCa -3'
miRNA:   3'- aCGUGu--------------UGACUGUUGcGCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 21259 0.7 0.547865
Target:  5'- cUGgACGACgGACAAgGUGGUgccgCGCCc -3'
miRNA:   3'- -ACgUGUUGaCUGUUgCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 46598 0.7 0.547865
Target:  5'- cUGCGCGAUUGGuCGGCaUGGCUcagcccuccUCGCCc -3'
miRNA:   3'- -ACGUGUUGACU-GUUGcGCCGA---------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.