miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 38691 1.11 0.000979
Target:  5'- cUGCACAACUGACAACGCGGCUUCGCCc -3'
miRNA:   3'- -ACGUGUUGACUGUUGCGCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 33557 0.81 0.12507
Target:  5'- cGCACGACgGACcauGCGCGGCgacaugUUGCCg -3'
miRNA:   3'- aCGUGUUGaCUGu--UGCGCCGa-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 20197 0.79 0.175662
Target:  5'- gUGCACGACUGggccagccACGACGCGGa--CGCCu -3'
miRNA:   3'- -ACGUGUUGAC--------UGUUGCGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 42821 0.79 0.175662
Target:  5'- uUGCACGgguccggcGCUGGCGGCGCGcGuCUUCGUCu -3'
miRNA:   3'- -ACGUGU--------UGACUGUUGCGC-C-GAAGCGG- -5'
11600 3' -53 NC_003085.1 + 2726 0.79 0.175662
Target:  5'- cGgGCGGCUGGCAGCGCGcGCgaaggCGCUg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGC-CGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 1945 0.78 0.207272
Target:  5'- aGCAgAAC-GGCA--GCGGCUUCGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUugCGCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 24701 0.77 0.230987
Target:  5'- gUGCugGAC-GGCGGCaucgGCGGCUUCGCg -3'
miRNA:   3'- -ACGugUUGaCUGUUG----CGCCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 1059 0.76 0.256949
Target:  5'- aGCGCcgccgaGGCaGACAAUGCGGCgcugcUCGCCg -3'
miRNA:   3'- aCGUG------UUGaCUGUUGCGCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 38269 0.76 0.284514
Target:  5'- cGCGCGACgacgacgGAUGGCGCgagcucgGGCUUUGCCu -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 26716 0.76 0.285251
Target:  5'- cGCGCAggGCggUGACGGCGCGGCgccggUGCUg -3'
miRNA:   3'- aCGUGU--UG--ACUGUUGCGCCGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 559 0.75 0.308054
Target:  5'- gGCGCGA--GGCGGCGCGGCUggcggGCCa -3'
miRNA:   3'- aCGUGUUgaCUGUUGCGCCGAag---CGG- -5'
11600 3' -53 NC_003085.1 + 10616 0.75 0.315958
Target:  5'- cGCGCGccgucGCaguggGACGACGCGGCagugCGCCc -3'
miRNA:   3'- aCGUGU-----UGa----CUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 24277 0.75 0.324014
Target:  5'- gGCGCAACUcGACcugcucgaGGCGCGGaugaaugUCGCCg -3'
miRNA:   3'- aCGUGUUGA-CUG--------UUGCGCCga-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 9101 0.75 0.324014
Target:  5'- aGCGCcGCgGGCAGCaGCGGCUU-GCCc -3'
miRNA:   3'- aCGUGuUGaCUGUUG-CGCCGAAgCGG- -5'
11600 3' -53 NC_003085.1 + 48692 0.74 0.332222
Target:  5'- cGCACcgUUGcGCGGCGUGGCggacUCGCCc -3'
miRNA:   3'- aCGUGuuGAC-UGUUGCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 37674 0.74 0.332222
Target:  5'- gGgGCAGCcGACAcgcccggaGCGCGGCgcCGCCg -3'
miRNA:   3'- aCgUGUUGaCUGU--------UGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 13553 0.74 0.332222
Target:  5'- cUGCGCGGCUGGC--CGUGGCaUgGCCc -3'
miRNA:   3'- -ACGUGUUGACUGuuGCGCCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 7328 0.74 0.349093
Target:  5'- cGCggagGCGGCUGAgGACGCGgGCUacacgCGCCc -3'
miRNA:   3'- aCG----UGUUGACUgUUGCGC-CGAa----GCGG- -5'
11600 3' -53 NC_003085.1 + 48377 0.74 0.349093
Target:  5'- cGCGCucCUGA--GCGCGGCgagcagCGCCg -3'
miRNA:   3'- aCGUGuuGACUguUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 15811 0.73 0.384632
Target:  5'- uUGCAUuGCUGGCcgcCGUGGCccucUUCGCCu -3'
miRNA:   3'- -ACGUGuUGACUGuu-GCGCCG----AAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.