miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 409 0.69 0.614974
Target:  5'- --aGCAACUGACgGACGUGGagUUgGCCg -3'
miRNA:   3'- acgUGUUGACUG-UUGCGCCg-AAgCGG- -5'
11600 3' -53 NC_003085.1 + 480 0.66 0.819319
Target:  5'- cGCACGACggccauCAGCGCGGagaugaaggCGCg -3'
miRNA:   3'- aCGUGUUGacu---GUUGCGCCgaa------GCGg -5'
11600 3' -53 NC_003085.1 + 559 0.75 0.308054
Target:  5'- gGCGCGA--GGCGGCGCGGCUggcggGCCa -3'
miRNA:   3'- aCGUGUUgaCUGUUGCGCCGAag---CGG- -5'
11600 3' -53 NC_003085.1 + 1010 0.73 0.384632
Target:  5'- gGCugAGgUGGCcuaugcuCGCGGCcUCGCCg -3'
miRNA:   3'- aCGugUUgACUGuu-----GCGCCGaAGCGG- -5'
11600 3' -53 NC_003085.1 + 1049 0.7 0.547865
Target:  5'- gGCGCcgAACUGcCcGCGUGGCUcCGCUg -3'
miRNA:   3'- aCGUG--UUGACuGuUGCGCCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 1059 0.76 0.256949
Target:  5'- aGCGCcgccgaGGCaGACAAUGCGGCgcugcUCGCCg -3'
miRNA:   3'- aCGUG------UUGaCUGUUGCGCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 1328 0.66 0.799923
Target:  5'- gGCACuGC-GAUGGCGCuggaguacggacGGCUUcCGCCu -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG------------CCGAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 1564 0.71 0.525963
Target:  5'- gUGCGCGucgcCUGcaguuGCGGCGCGGCguacgcgUGCCg -3'
miRNA:   3'- -ACGUGUu---GAC-----UGUUGCGCCGaa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 1644 0.69 0.648868
Target:  5'- gGCACAACc-GCAACGUcugGGCUg-GCCa -3'
miRNA:   3'- aCGUGUUGacUGUUGCG---CCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 1945 0.78 0.207272
Target:  5'- aGCAgAAC-GGCA--GCGGCUUCGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUugCGCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 1965 0.72 0.432293
Target:  5'- cGCAgUGGCgGACAcggaACGCGGCagCGCCa -3'
miRNA:   3'- aCGU-GUUGaCUGU----UGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 2477 0.66 0.789942
Target:  5'- cGCAUaGugUGGCcaucAGCGCGGCgcUUCaGCCg -3'
miRNA:   3'- aCGUG-UugACUG----UUGCGCCG--AAG-CGG- -5'
11600 3' -53 NC_003085.1 + 2635 0.66 0.779788
Target:  5'- cGuCGCAACUcGGCGGCGaGGUgaUGCCg -3'
miRNA:   3'- aC-GUGUUGA-CUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 2726 0.79 0.175662
Target:  5'- cGgGCGGCUGGCAGCGCGcGCgaaggCGCUg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGC-CGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 3081 0.67 0.726841
Target:  5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3'
miRNA:   3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5'
11600 3' -53 NC_003085.1 + 3154 0.66 0.779788
Target:  5'- gGCGCucGCUGACuucCGCGcGCacaGCCa -3'
miRNA:   3'- aCGUGu-UGACUGuu-GCGC-CGaagCGG- -5'
11600 3' -53 NC_003085.1 + 3348 0.72 0.459421
Target:  5'- uUGCGCGACgcauggGugAGCcagaauccgacccaGCGGCU-CGCCg -3'
miRNA:   3'- -ACGUGUUGa-----CugUUG--------------CGCCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 3435 0.68 0.671401
Target:  5'- aUGCGCAgagcccACUGACAugcccuGCcCGGCcgUCGUCa -3'
miRNA:   3'- -ACGUGU------UGACUGU------UGcGCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 3656 0.69 0.649997
Target:  5'- cUGCACugguGGCgagguuggaggcaggGACGGCGCGGCgaguccugaCGCCg -3'
miRNA:   3'- -ACGUG----UUGa--------------CUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 3771 0.68 0.660148
Target:  5'- cGCAguGCuccgUGACu-CGCGGCUgacggaCGCCg -3'
miRNA:   3'- aCGUguUG----ACUGuuGCGCCGAa-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.