miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 48995 0.68 0.693777
Target:  5'- gUGgGCAcCUGcaACAGCGcCGGCUggcccuccgCGCCg -3'
miRNA:   3'- -ACgUGUuGAC--UGUUGC-GCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 48848 0.67 0.759007
Target:  5'- aGCACAACccGccguaggccGCGACG-GGCUugcagUCGCCg -3'
miRNA:   3'- aCGUGUUGa-C---------UGUUGCgCCGA-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 48773 0.72 0.432293
Target:  5'- uUGCcccgugGCGACUGGCGGCGCuuCUUCGCg -3'
miRNA:   3'- -ACG------UGUUGACUGUUGCGccGAAGCGg -5'
11600 3' -53 NC_003085.1 + 48692 0.74 0.332222
Target:  5'- cGCACcgUUGcGCGGCGUGGCggacUCGCCc -3'
miRNA:   3'- aCGUGuuGAC-UGUUGCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 48377 0.74 0.349093
Target:  5'- cGCGCucCUGA--GCGCGGCgagcagCGCCg -3'
miRNA:   3'- aCGUGuuGACUguUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 48285 0.7 0.570046
Target:  5'- cGCGCAGa--GCAGCGCgugGGCUcCGCCc -3'
miRNA:   3'- aCGUGUUgacUGUUGCG---CCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 48137 0.69 0.648868
Target:  5'- aGuCugGGCUGccuccucCAGCGCGGCgUCGCg -3'
miRNA:   3'- aC-GugUUGACu------GUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 47902 0.7 0.570046
Target:  5'- cGCACuGCaGGCGACGCgcacGGCcUCGCg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG----CCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 47722 0.72 0.462491
Target:  5'- cUGCGCcuGCUGACgGGCGCGGUgcgcguagcgUCGCa -3'
miRNA:   3'- -ACGUGu-UGACUG-UUGCGCCGa---------AGCGg -5'
11600 3' -53 NC_003085.1 + 47027 0.7 0.547865
Target:  5'- gGCGCGuuGCaggguagGGCAGCGCGuCUUCGUCa -3'
miRNA:   3'- aCGUGU--UGa------CUGUUGCGCcGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 46598 0.7 0.547865
Target:  5'- cUGCGCGAUUGGuCGGCaUGGCUcagcccuccUCGCCc -3'
miRNA:   3'- -ACGUGUUGACU-GUUGcGCCGA---------AGCGG- -5'
11600 3' -53 NC_003085.1 + 46491 0.66 0.819319
Target:  5'- cUGCGC-GCUcGACGAaaccacCGCGcGCUUgaCGCCg -3'
miRNA:   3'- -ACGUGuUGA-CUGUU------GCGC-CGAA--GCGG- -5'
11600 3' -53 NC_003085.1 + 45741 0.67 0.726841
Target:  5'- cGguCAuGCUGACGccucGCGUGGCacgUCGCg -3'
miRNA:   3'- aCguGU-UGACUGU----UGCGCCGa--AGCGg -5'
11600 3' -53 NC_003085.1 + 45582 0.67 0.737679
Target:  5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3'
miRNA:   3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 44788 0.71 0.504399
Target:  5'- gGCGCAACUcGGCGcCGUgaaaGGCU-CGCCu -3'
miRNA:   3'- aCGUGUUGA-CUGUuGCG----CCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 42821 0.79 0.175662
Target:  5'- uUGCACGgguccggcGCUGGCGGCGCGcGuCUUCGUCu -3'
miRNA:   3'- -ACGUGU--------UGACUGUUGCGC-C-GAAGCGG- -5'
11600 3' -53 NC_003085.1 + 42560 0.68 0.692663
Target:  5'- cGCGCGggcgaggGCUGAC-GCGaUGGCcucaaugUCGCCg -3'
miRNA:   3'- aCGUGU-------UGACUGuUGC-GCCGa------AGCGG- -5'
11600 3' -53 NC_003085.1 + 42520 0.67 0.748405
Target:  5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3'
miRNA:   3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 41459 0.68 0.6714
Target:  5'- cGCGCAagGCUGG-GGCGCGGgUgaaguaccgCGCCa -3'
miRNA:   3'- aCGUGU--UGACUgUUGCGCCgAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 40991 0.7 0.58122
Target:  5'- gGCAagGGCUGGCccaGCGGCgucgucaUCGCCg -3'
miRNA:   3'- aCGUg-UUGACUGuugCGCCGa------AGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.