miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 15158 0.7 0.537971
Target:  5'- cGCACuacugcccccucugcGCUGACGGCcCGGCUgagccggugCGCCa -3'
miRNA:   3'- aCGUGu--------------UGACUGUUGcGCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 39642 0.72 0.462491
Target:  5'- gGCGCAACUucgcGACGACaccgaGCGGCgcgCGCg -3'
miRNA:   3'- aCGUGUUGA----CUGUUG-----CGCCGaa-GCGg -5'
11600 3' -53 NC_003085.1 + 47722 0.72 0.462491
Target:  5'- cUGCGCcuGCUGACgGGCGCGGUgcgcguagcgUCGCa -3'
miRNA:   3'- -ACGUGu-UGACUG-UUGCGCCGa---------AGCGg -5'
11600 3' -53 NC_003085.1 + 10057 0.72 0.472801
Target:  5'- cGCGCGACUGACA---CGGCUgggUUGCUu -3'
miRNA:   3'- aCGUGUUGACUGUugcGCCGA---AGCGG- -5'
11600 3' -53 NC_003085.1 + 44788 0.71 0.504399
Target:  5'- gGCGCAACUcGGCGcCGUgaaaGGCU-CGCCu -3'
miRNA:   3'- aCGUGUUGA-CUGUuGCG----CCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 12288 0.71 0.515135
Target:  5'- cGCAC-GC-GACGGCGCGGUggucCGCUg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 1564 0.71 0.525963
Target:  5'- gUGCGCGucgcCUGcaguuGCGGCGCGGCguacgcgUGCCg -3'
miRNA:   3'- -ACGUGUu---GAC-----UGUUGCGCCGaa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 12040 0.7 0.536875
Target:  5'- cUGCGCGACUucguGCGCcGCUUCGCg -3'
miRNA:   3'- -ACGUGUUGAcuguUGCGcCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 17995 0.7 0.536875
Target:  5'- gGCACGgaGCUgcGAgAGCGCGGaCUggCGCCc -3'
miRNA:   3'- aCGUGU--UGA--CUgUUGCGCC-GAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 48773 0.72 0.432293
Target:  5'- uUGCcccgugGCGACUGGCGGCGCuuCUUCGCg -3'
miRNA:   3'- -ACG------UGUUGACUGUUGCGccGAAGCGg -5'
11600 3' -53 NC_003085.1 + 7328 0.74 0.349093
Target:  5'- cGCggagGCGGCUGAgGACGCGgGCUacacgCGCCc -3'
miRNA:   3'- aCG----UGUUGACUgUUGCGC-CGAa----GCGG- -5'
11600 3' -53 NC_003085.1 + 48377 0.74 0.349093
Target:  5'- cGCGCucCUGA--GCGCGGCgagcagCGCCg -3'
miRNA:   3'- aCGUGuuGACUguUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 20197 0.79 0.175662
Target:  5'- gUGCACGACUGggccagccACGACGCGGa--CGCCu -3'
miRNA:   3'- -ACGUGUUGAC--------UGUUGCGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 42821 0.79 0.175662
Target:  5'- uUGCACGgguccggcGCUGGCGGCGCGcGuCUUCGUCu -3'
miRNA:   3'- -ACGUGU--------UGACUGUUGCGC-C-GAAGCGG- -5'
11600 3' -53 NC_003085.1 + 1945 0.78 0.207272
Target:  5'- aGCAgAAC-GGCA--GCGGCUUCGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUugCGCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 24701 0.77 0.230987
Target:  5'- gUGCugGAC-GGCGGCaucgGCGGCUUCGCg -3'
miRNA:   3'- -ACGugUUGaCUGUUG----CGCCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 38269 0.76 0.284514
Target:  5'- cGCGCGACgacgacgGAUGGCGCgagcucgGGCUUUGCCu -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 26716 0.76 0.285251
Target:  5'- cGCGCAggGCggUGACGGCGCGGCgccggUGCUg -3'
miRNA:   3'- aCGUGU--UG--ACUGUUGCGCCGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 24277 0.75 0.324014
Target:  5'- gGCGCAACUcGACcugcucgaGGCGCGGaugaaugUCGCCg -3'
miRNA:   3'- aCGUGUUGA-CUG--------UUGCGCCga-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 48692 0.74 0.332222
Target:  5'- cGCACcgUUGcGCGGCGUGGCggacUCGCCc -3'
miRNA:   3'- aCGUGuuGAC-UGUUGCGCCGa---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.