miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 46491 0.66 0.819319
Target:  5'- cUGCGC-GCUcGACGAaaccacCGCGcGCUUgaCGCCg -3'
miRNA:   3'- -ACGUGuUGA-CUGUU------GCGC-CGAA--GCGG- -5'
11600 3' -53 NC_003085.1 + 12501 0.67 0.748405
Target:  5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3'
miRNA:   3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 40879 0.67 0.737679
Target:  5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3'
miRNA:   3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 33557 0.81 0.12507
Target:  5'- cGCACGACgGACcauGCGCGGCgacaugUUGCCg -3'
miRNA:   3'- aCGUGUUGaCUGu--UGCGCCGa-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 10667 0.66 0.819319
Target:  5'- gGCugAGC-GACAGCGCagcgacgagGGCgagCGCa -3'
miRNA:   3'- aCGugUUGaCUGUUGCG---------CCGaa-GCGg -5'
11600 3' -53 NC_003085.1 + 480 0.66 0.819319
Target:  5'- cGCACGACggccauCAGCGCGGagaugaaggCGCg -3'
miRNA:   3'- aCGUGUUGacu---GUUGCGCCgaa------GCGg -5'
11600 3' -53 NC_003085.1 + 11356 0.66 0.809719
Target:  5'- gGCACcuCcgaGACgAugGUGGCggCGCCg -3'
miRNA:   3'- aCGUGuuGa--CUG-UugCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 33367 0.66 0.799923
Target:  5'- gGCGgGACaGACAcCGCGcGCUcaGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUuGCGC-CGAagCGG- -5'
11600 3' -53 NC_003085.1 + 36357 0.66 0.779788
Target:  5'- cGCGCucACgcaccuCAGCGCGGCgu-GCCa -3'
miRNA:   3'- aCGUGu-UGacu---GUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 34177 0.67 0.748405
Target:  5'- gGC-CAGCaUGACGcggGCGCGGCgggugagcUCgGCCg -3'
miRNA:   3'- aCGuGUUG-ACUGU---UGCGCCGa-------AG-CGG- -5'
11600 3' -53 NC_003085.1 + 38085 0.66 0.779788
Target:  5'- aGCGCuccacccacuuGCUGACggUGUccuGGCUgaCGCCg -3'
miRNA:   3'- aCGUGu----------UGACUGuuGCG---CCGAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 26634 0.66 0.788935
Target:  5'- cUGC-CGACgUGGCAAucggaguCGgGGCcgUCGCCu -3'
miRNA:   3'- -ACGuGUUG-ACUGUU-------GCgCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 40288 0.66 0.819319
Target:  5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3'
miRNA:   3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 2635 0.66 0.779788
Target:  5'- cGuCGCAACUcGGCGGCGaGGUgaUGCCg -3'
miRNA:   3'- aC-GUGUUGA-CUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 34341 0.66 0.819319
Target:  5'- cGCACcAC--GCGGCGCGGCgcuccauccgcUCGUCg -3'
miRNA:   3'- aCGUGuUGacUGUUGCGCCGa----------AGCGG- -5'
11600 3' -53 NC_003085.1 + 40679 0.66 0.789942
Target:  5'- gGUgaGCAACaGGCuGCGCGccacCUUCGCCu -3'
miRNA:   3'- aCG--UGUUGaCUGuUGCGCc---GAAGCGG- -5'
11600 3' -53 NC_003085.1 + 8836 0.67 0.759007
Target:  5'- aGgGCGACgagGACGGCaGCGGC--CGUCa -3'
miRNA:   3'- aCgUGUUGa--CUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 45582 0.67 0.737679
Target:  5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3'
miRNA:   3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 9024 0.66 0.819319
Target:  5'- cGUAgGGCUgGACGGCGgcaGGCagcgCGCCu -3'
miRNA:   3'- aCGUgUUGA-CUGUUGCg--CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 8024 0.66 0.809719
Target:  5'- cGCGCcAACUcGACGgagaGCGUauGGCUgUUGCCg -3'
miRNA:   3'- aCGUG-UUGA-CUGU----UGCG--CCGA-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.