miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 23405 0.66 0.789942
Target:  5'- aGCA-GGCUGAgCAGCGagucaugcaGcGCUUCGCCc -3'
miRNA:   3'- aCGUgUUGACU-GUUGCg--------C-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 26634 0.66 0.788935
Target:  5'- cUGC-CGACgUGGCAAucggaguCGgGGCcgUCGCCu -3'
miRNA:   3'- -ACGuGUUG-ACUGUU-------GCgCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 29191 0.66 0.779788
Target:  5'- aGCGCcGC-GAgGACGCGGagcgcacgCGCCu -3'
miRNA:   3'- aCGUGuUGaCUgUUGCGCCgaa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 3154 0.66 0.779788
Target:  5'- gGCGCucGCUGACuucCGCGcGCacaGCCa -3'
miRNA:   3'- aCGUGu-UGACUGuu-GCGC-CGaagCGG- -5'
11600 3' -53 NC_003085.1 + 38085 0.66 0.779788
Target:  5'- aGCGCuccacccacuuGCUGACggUGUccuGGCUgaCGCCg -3'
miRNA:   3'- aCGUGu----------UGACUGuuGCG---CCGAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 4326 0.66 0.779788
Target:  5'- cUGCACcuCUucgucGACGACGaCGGCaaUGCCu -3'
miRNA:   3'- -ACGUGuuGA-----CUGUUGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 36357 0.66 0.779788
Target:  5'- cGCGCucACgcaccuCAGCGCGGCgu-GCCa -3'
miRNA:   3'- aCGUGu-UGacu---GUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 2635 0.66 0.779788
Target:  5'- cGuCGCAACUcGGCGGCGaGGUgaUGCCg -3'
miRNA:   3'- aC-GUGUUGA-CUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 16083 0.67 0.759007
Target:  5'- uUGCgACAgugGCUGAgcGCGCGGUgucuguccCGCCa -3'
miRNA:   3'- -ACG-UGU---UGACUguUGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 48848 0.67 0.759007
Target:  5'- aGCACAACccGccguaggccGCGACG-GGCUugcagUCGCCg -3'
miRNA:   3'- aCGUGUUGa-C---------UGUUGCgCCGA-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 8836 0.67 0.759007
Target:  5'- aGgGCGACgagGACGGCaGCGGC--CGUCa -3'
miRNA:   3'- aCgUGUUGa--CUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 32141 0.67 0.759007
Target:  5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 28507 0.67 0.757953
Target:  5'- cGCGCcauucaggcggugGACgcgucagGGCGAaucCGCGGCgucgUCGCCu -3'
miRNA:   3'- aCGUG-------------UUGa------CUGUU---GCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 13628 0.67 0.748405
Target:  5'- gGCACGACUGAgu-CGCaGGCgcUCGgCg -3'
miRNA:   3'- aCGUGUUGACUguuGCG-CCGa-AGCgG- -5'
11600 3' -53 NC_003085.1 + 34177 0.67 0.748405
Target:  5'- gGC-CAGCaUGACGcggGCGCGGCgggugagcUCgGCCg -3'
miRNA:   3'- aCGuGUUG-ACUGU---UGCGCCGa-------AG-CGG- -5'
11600 3' -53 NC_003085.1 + 12501 0.67 0.748405
Target:  5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3'
miRNA:   3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 15211 0.67 0.748405
Target:  5'- cGCGCcGCggaagugGGCGAgGUGGaCUUgCGCCa -3'
miRNA:   3'- aCGUGuUGa------CUGUUgCGCC-GAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 42520 0.67 0.748405
Target:  5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3'
miRNA:   3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.