miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 45582 0.67 0.737679
Target:  5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3'
miRNA:   3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 29168 0.67 0.737679
Target:  5'- gGCGCGuugGGCAcgGCcuugGGCUUCGCCu -3'
miRNA:   3'- aCGUGUugaCUGUugCG----CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 40879 0.67 0.737679
Target:  5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3'
miRNA:   3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 3081 0.67 0.726841
Target:  5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3'
miRNA:   3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5'
11600 3' -53 NC_003085.1 + 35180 0.67 0.726841
Target:  5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3'
miRNA:   3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 45741 0.67 0.726841
Target:  5'- cGguCAuGCUGACGccucGCGUGGCacgUCGCg -3'
miRNA:   3'- aCguGU-UGACUGU----UGCGCCGa--AGCGg -5'
11600 3' -53 NC_003085.1 + 28857 0.67 0.72684
Target:  5'- cGCGCcGCccGACuucCGCGGCgcUGCCg -3'
miRNA:   3'- aCGUGuUGa-CUGuu-GCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 25427 0.67 0.72684
Target:  5'- gGCaACGGCUGAgCAGCacugaGCGGCg--GCCg -3'
miRNA:   3'- aCG-UGUUGACU-GUUG-----CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 23124 0.67 0.725751
Target:  5'- gGCGCAGCaccgcaaGACGGCGCagagcuucgagcaGGUggugUCGCCc -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------------CCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 24438 0.67 0.715903
Target:  5'- cGCGCGGgUGAUggUGCccaGCggCGCCu -3'
miRNA:   3'- aCGUGUUgACUGuuGCGc--CGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 24204 0.67 0.715902
Target:  5'- aGUACGcGCUGAagcaguACGCGGUgcccgUCGUCa -3'
miRNA:   3'- aCGUGU-UGACUgu----UGCGCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 10305 0.67 0.715902
Target:  5'- gGUcCGGCUGuggaacgaauGCGAUGCGGCcccCGCCa -3'
miRNA:   3'- aCGuGUUGAC----------UGUUGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 27060 0.67 0.715902
Target:  5'- aGCGCcaaguCUG---GCGCGGCgaaUCGCCu -3'
miRNA:   3'- aCGUGuu---GACuguUGCGCCGa--AGCGG- -5'
11600 3' -53 NC_003085.1 + 25615 0.67 0.715902
Target:  5'- aGCGCGACgaggaggaGACGACGaaGGCcgggCGCCc -3'
miRNA:   3'- aCGUGUUGa-------CUGUUGCg-CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 20926 0.68 0.693777
Target:  5'- cGUagGCGAC-GACGcCGCGGaUUCGCCc -3'
miRNA:   3'- aCG--UGUUGaCUGUuGCGCCgAAGCGG- -5'
11600 3' -53 NC_003085.1 + 48995 0.68 0.693777
Target:  5'- gUGgGCAcCUGcaACAGCGcCGGCUggcccuccgCGCCg -3'
miRNA:   3'- -ACgUGUuGAC--UGUUGC-GCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 42560 0.68 0.692663
Target:  5'- cGCGCGggcgaggGCUGAC-GCGaUGGCcucaaugUCGCCg -3'
miRNA:   3'- aCGUGU-------UGACUGuUGC-GCCGa------AGCGG- -5'
11600 3' -53 NC_003085.1 + 8116 0.68 0.687086
Target:  5'- aGUugGgcGCUGAUGACGUGGUggaccugcucaagCGCCg -3'
miRNA:   3'- aCGugU--UGACUGUUGCGCCGaa-----------GCGG- -5'
11600 3' -53 NC_003085.1 + 27636 0.68 0.682615
Target:  5'- aGCGCGACuUGAUgAGCucgGCGGCcuugggCGCCa -3'
miRNA:   3'- aCGUGUUG-ACUG-UUG---CGCCGaa----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.