miRNA display CGI


Results 61 - 80 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 3435 0.68 0.671401
Target:  5'- aUGCGCAgagcccACUGACAugcccuGCcCGGCcgUCGUCa -3'
miRNA:   3'- -ACGUGU------UGACUGU------UGcGCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 21684 0.68 0.6714
Target:  5'- aGCGCcuCcagGACGAgGUGGCccgcUUCGCCu -3'
miRNA:   3'- aCGUGuuGa--CUGUUgCGCCG----AAGCGG- -5'
11600 3' -53 NC_003085.1 + 5180 0.68 0.6714
Target:  5'- gGCGCGGaaGGCAGgGCGGCgcCGUg -3'
miRNA:   3'- aCGUGUUgaCUGUUgCGCCGaaGCGg -5'
11600 3' -53 NC_003085.1 + 41459 0.68 0.6714
Target:  5'- cGCGCAagGCUGG-GGCGCGGgUgaaguaccgCGCCa -3'
miRNA:   3'- aCGUGU--UGACUgUUGCGCCgAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 34270 0.68 0.660148
Target:  5'- gGCGCGgcGCUGGCGcAC-CGGCUcaGCCg -3'
miRNA:   3'- aCGUGU--UGACUGU-UGcGCCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 23430 0.68 0.660148
Target:  5'- cUGCuccuuCAACUGcUGGCGCaGCgUCGCCa -3'
miRNA:   3'- -ACGu----GUUGACuGUUGCGcCGaAGCGG- -5'
11600 3' -53 NC_003085.1 + 8536 0.68 0.660148
Target:  5'- gGCACcuCUcGGC-GCGCGGCgagcUCGUCa -3'
miRNA:   3'- aCGUGuuGA-CUGuUGCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 23648 0.68 0.660148
Target:  5'- aGCGCgAGCaGGCcGCGCaGGCgaaCGCCg -3'
miRNA:   3'- aCGUG-UUGaCUGuUGCG-CCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 17675 0.68 0.660148
Target:  5'- gGCGCugaGACcGACGACGCGGCcagGCa -3'
miRNA:   3'- aCGUG---UUGaCUGUUGCGCCGaagCGg -5'
11600 3' -53 NC_003085.1 + 3771 0.68 0.660148
Target:  5'- cGCAguGCuccgUGACu-CGCGGCUgacggaCGCCg -3'
miRNA:   3'- aCGUguUG----ACUGuuGCGCCGAa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 3656 0.69 0.649997
Target:  5'- cUGCACugguGGCgagguuggaggcaggGACGGCGCGGCgaguccugaCGCCg -3'
miRNA:   3'- -ACGUG----UUGa--------------CUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 1644 0.69 0.648868
Target:  5'- gGCACAACc-GCAACGUcugGGCUg-GCCa -3'
miRNA:   3'- aCGUGUUGacUGUUGCG---CCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 26206 0.69 0.648868
Target:  5'- cUGCGCcuuguGCgcgGGCGGCGCGGUgcgaagCGCg -3'
miRNA:   3'- -ACGUGu----UGa--CUGUUGCGCCGaa----GCGg -5'
11600 3' -53 NC_003085.1 + 48137 0.69 0.648868
Target:  5'- aGuCugGGCUGccuccucCAGCGCGGCgUCGCg -3'
miRNA:   3'- aC-GugUUGACu------GUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 27495 0.69 0.648868
Target:  5'- cUGUGgAACUgGACGuACGaCGGCggCGCCg -3'
miRNA:   3'- -ACGUgUUGA-CUGU-UGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 4205 0.69 0.648868
Target:  5'- gGaCGCcGCUGAC-GCGCGGCggguuaCGCUg -3'
miRNA:   3'- aC-GUGuUGACUGuUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 23557 0.69 0.648868
Target:  5'- gGCGCuGCU--CGGCGCGGCguugcgaugUCGCUg -3'
miRNA:   3'- aCGUGuUGAcuGUUGCGCCGa--------AGCGG- -5'
11600 3' -53 NC_003085.1 + 20999 0.69 0.648868
Target:  5'- aUGCGCGAgUu-CAACGCGcGCUUCGaCg -3'
miRNA:   3'- -ACGUGUUgAcuGUUGCGC-CGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 30010 0.69 0.647739
Target:  5'- cUGgGCGGCcuUGGCGAcgucgucCGCGGCUUCcaggGCCa -3'
miRNA:   3'- -ACgUGUUG--ACUGUU-------GCGCCGAAG----CGG- -5'
11600 3' -53 NC_003085.1 + 10985 0.69 0.637572
Target:  5'- gGCGaGACguUGGgGACGCGGCaUCGCg -3'
miRNA:   3'- aCGUgUUG--ACUgUUGCGCCGaAGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.