miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 10718 0.69 0.614974
Target:  5'- gGCACuGGCUGACGGCaaGCGGa--CGCUg -3'
miRNA:   3'- aCGUG-UUGACUGUUG--CGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 10985 0.69 0.637572
Target:  5'- gGCGaGACguUGGgGACGCGGCaUCGCg -3'
miRNA:   3'- aCGUgUUG--ACUgUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 11356 0.66 0.809719
Target:  5'- gGCACcuCcgaGACgAugGUGGCggCGCCg -3'
miRNA:   3'- aCGUGuuGa--CUG-UugCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 12040 0.7 0.536875
Target:  5'- cUGCGCGACUucguGCGCcGCUUCGCg -3'
miRNA:   3'- -ACGUGUUGAcuguUGCGcCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 12288 0.71 0.515135
Target:  5'- cGCAC-GC-GACGGCGCGGUggucCGCUg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 12501 0.67 0.748405
Target:  5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3'
miRNA:   3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 12599 0.69 0.614974
Target:  5'- gGUcCGACUGACGcGCGUGGCgccccgggCGCUg -3'
miRNA:   3'- aCGuGUUGACUGU-UGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 13478 0.66 0.789942
Target:  5'- gGCGCGGCUcGACcuggaccucggaGACGUGGCagCGgCg -3'
miRNA:   3'- aCGUGUUGA-CUG------------UUGCGCCGaaGCgG- -5'
11600 3' -53 NC_003085.1 + 13553 0.74 0.332222
Target:  5'- cUGCGCGGCUGGC--CGUGGCaUgGCCc -3'
miRNA:   3'- -ACGUGUUGACUGuuGCGCCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 13628 0.67 0.748405
Target:  5'- gGCACGACUGAgu-CGCaGGCgcUCGgCg -3'
miRNA:   3'- aCGUGUUGACUguuGCG-CCGa-AGCgG- -5'
11600 3' -53 NC_003085.1 + 14348 0.69 0.637572
Target:  5'- gGCACGGCcauuagGACAGaagccaGCGGCUggcugCGCg -3'
miRNA:   3'- aCGUGUUGa-----CUGUUg-----CGCCGAa----GCGg -5'
11600 3' -53 NC_003085.1 + 14870 0.66 0.819319
Target:  5'- cGCGCaAGgUGACgGACGagcaGGUgUUCGCCg -3'
miRNA:   3'- aCGUG-UUgACUG-UUGCg---CCG-AAGCGG- -5'
11600 3' -53 NC_003085.1 + 15158 0.7 0.537971
Target:  5'- cGCACuacugcccccucugcGCUGACGGCcCGGCUgagccggugCGCCa -3'
miRNA:   3'- aCGUGu--------------UGACUGUUGcGCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 15211 0.67 0.748405
Target:  5'- cGCGCcGCggaagugGGCGAgGUGGaCUUgCGCCa -3'
miRNA:   3'- aCGUGuUGa------CUGUUgCGCC-GAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 15811 0.73 0.384632
Target:  5'- uUGCAUuGCUGGCcgcCGUGGCccucUUCGCCu -3'
miRNA:   3'- -ACGUGuUGACUGuu-GCGCCG----AAGCGG- -5'
11600 3' -53 NC_003085.1 + 16083 0.67 0.759007
Target:  5'- uUGCgACAgugGCUGAgcGCGCGGUgucuguccCGCCa -3'
miRNA:   3'- -ACG-UGU---UGACUguUGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 17675 0.68 0.660148
Target:  5'- gGCGCugaGACcGACGACGCGGCcagGCa -3'
miRNA:   3'- aCGUG---UUGaCUGUUGCGCCGaagCGg -5'
11600 3' -53 NC_003085.1 + 17842 0.72 0.462491
Target:  5'- gGCACGACUucaGGCccCGCGGCcggUGCCu -3'
miRNA:   3'- aCGUGUUGA---CUGuuGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 17995 0.7 0.536875
Target:  5'- gGCACGgaGCUgcGAgAGCGCGGaCUggCGCCc -3'
miRNA:   3'- aCGUGU--UGA--CUgUUGCGCC-GAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 18772 0.66 0.809719
Target:  5'- cGgGCGAUgGACAAagcgaagGCGGCUgUCGCUg -3'
miRNA:   3'- aCgUGUUGaCUGUUg------CGCCGA-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.