Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11601 | 5' | -56.6 | NC_003085.1 | + | 2369 | 0.68 | 0.516017 |
Target: 5'- uGCGAgGCcGCGGCG-CGCgaGCUCUCg -3' miRNA: 3'- -CGUUgUGaUGCCGCgGCGgcUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 1070 | 0.68 | 0.516018 |
Target: 5'- gGCAgACAaUGCGGCGCUGCuCGcCgcgCUCa -3' miRNA: 3'- -CGU-UGUgAUGCCGCGGCG-GCuGa--GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26461 | 0.68 | 0.516018 |
Target: 5'- cCAGgACUGCGGCGCgCGCac-CUCUg -3' miRNA: 3'- cGUUgUGAUGCCGCG-GCGgcuGAGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 48396 | 0.68 | 0.517067 |
Target: 5'- aGCAGCGCcgcauugucugccuCGGCGgCGCUGGCUucCUCc -3' miRNA: 3'- -CGUUGUGau------------GCCGCgGCGGCUGA--GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 21106 | 0.67 | 0.526553 |
Target: 5'- cGCGcCACgGCGGUGCCGCgGAUgg-Cg -3' miRNA: 3'- -CGUuGUGaUGCCGCGGCGgCUGagaG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 47873 | 0.67 | 0.537168 |
Target: 5'- aGCGAgACgucaGCGcGUGCgGCCuGCUCUCu -3' miRNA: 3'- -CGUUgUGa---UGC-CGCGgCGGcUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 37897 | 0.67 | 0.537168 |
Target: 5'- gGCAcCACgccgACGGCGCUGCCc-UUCUUc -3' miRNA: 3'- -CGUuGUGa---UGCCGCGGCGGcuGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 18659 | 0.67 | 0.537169 |
Target: 5'- cGCggUgauuGCUGCGGCG-CGCucaCGGCUCUUc -3' miRNA: 3'- -CGuuG----UGAUGCCGCgGCG---GCUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 13003 | 0.67 | 0.547857 |
Target: 5'- aGUGGCACUACcucgccaugaGGCGCCGCC--CUC-Cg -3' miRNA: 3'- -CGUUGUGAUG----------CCGCGGCGGcuGAGaG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 24225 | 0.67 | 0.552151 |
Target: 5'- cGCGgagcGCACcaggGCGGCGCCggugaugagguaccaGCCGuACUgCUCg -3' miRNA: 3'- -CGU----UGUGa---UGCCGCGG---------------CGGC-UGA-GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 36966 | 0.67 | 0.558611 |
Target: 5'- cGCGGgGCcauguUGGCGCCGCuuCGACUCc- -3' miRNA: 3'- -CGUUgUGau---GCCGCGGCG--GCUGAGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 28620 | 0.67 | 0.569424 |
Target: 5'- aGCGGCgaGCU-CGGCGCCgGUCGcCUCa- -3' miRNA: 3'- -CGUUG--UGAuGCCGCGG-CGGCuGAGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 21021 | 0.67 | 0.569424 |
Target: 5'- uCGACGCggACGGCaGCCGCaauCUCUg -3' miRNA: 3'- cGUUGUGa-UGCCG-CGGCGgcuGAGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 37214 | 0.67 | 0.569424 |
Target: 5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3' miRNA: 3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 10464 | 0.66 | 0.587919 |
Target: 5'- cGCGACGuagcgggcucgaauCUGCGGgGCCGucucaCCGACgauggCUCc -3' miRNA: 3'- -CGUUGU--------------GAUGCCgCGGC-----GGCUGa----GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 13466 | 0.66 | 0.591194 |
Target: 5'- cGCGGuCAUcGCGGCGCgGCuCGAC-CUg -3' miRNA: 3'- -CGUU-GUGaUGCCGCGgCG-GCUGaGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26744 | 0.66 | 0.591195 |
Target: 5'- ----uGCUucuCGGCaGCCGCCgccaggGACUCUCu -3' miRNA: 3'- cguugUGAu--GCCG-CGGCGG------CUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 5160 | 0.66 | 0.602136 |
Target: 5'- cGCAACACcucGCGGCGaUUGCUG-CUCg- -3' miRNA: 3'- -CGUUGUGa--UGCCGC-GGCGGCuGAGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 37851 | 0.66 | 0.613102 |
Target: 5'- gGUAGCGCUGCcuGCGCUGgCCGGC-Ca- -3' miRNA: 3'- -CGUUGUGAUGc-CGCGGC-GGCUGaGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 2080 | 0.66 | 0.624086 |
Target: 5'- gGUGACGCgACGaGCgcaGCCGCCGcAC-CUCg -3' miRNA: 3'- -CGUUGUGaUGC-CG---CGGCGGC-UGaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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