miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 41817 0.7 0.362334
Target:  5'- cCAGgACU-CGGCGCCGuuGAUgcgCUCc -3'
miRNA:   3'- cGUUgUGAuGCCGCGGCggCUGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 14900 0.7 0.370106
Target:  5'- -uGGCugUGCGGCGCacgcggGCCGGCUgguggcgCUCg -3'
miRNA:   3'- cgUUGugAUGCCGCGg-----CGGCUGA-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 39567 0.7 0.370976
Target:  5'- cGCAGCugcguACUACGGCGCCaCUGGCaagCUg -3'
miRNA:   3'- -CGUUG-----UGAUGCCGCGGcGGCUGa--GAg -5'
11601 5' -56.6 NC_003085.1 + 17232 0.7 0.379758
Target:  5'- -gAGCAC-GCGGCGCC-CCGuGCUCUg -3'
miRNA:   3'- cgUUGUGaUGCCGCGGcGGC-UGAGAg -5'
11601 5' -56.6 NC_003085.1 + 8185 0.7 0.397734
Target:  5'- cGCAGCGCUuCGGCGUCucgguGUCGACggUCg -3'
miRNA:   3'- -CGUUGUGAuGCCGCGG-----CGGCUGagAG- -5'
11601 5' -56.6 NC_003085.1 + 35183 0.7 0.397735
Target:  5'- cGCGGCGCUugACGGCagcaGCCugGCCGcACgUCUCg -3'
miRNA:   3'- -CGUUGUGA--UGCCG----CGG--CGGC-UG-AGAG- -5'
11601 5' -56.6 NC_003085.1 + 42083 0.69 0.406925
Target:  5'- --cACGCg--GGCGCCGUCGGC-CUCg -3'
miRNA:   3'- cguUGUGaugCCGCGGCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 40668 0.69 0.406925
Target:  5'- cGCAAC-CUcGCGGaGCCGCCGGCg--- -3'
miRNA:   3'- -CGUUGuGA-UGCCgCGGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 37050 0.69 0.4257
Target:  5'- cGgAGCGCaGCGGCcCCGCCGGgUCg- -3'
miRNA:   3'- -CgUUGUGaUGCCGcGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 34272 0.69 0.435279
Target:  5'- cGCGGCGCU--GGCGCa-CCGGCUCa- -3'
miRNA:   3'- -CGUUGUGAugCCGCGgcGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 31478 0.69 0.435279
Target:  5'- cGCAGCuccgugccCUGCGGCccgcGCUGCCGGCgCUUc -3'
miRNA:   3'- -CGUUGu-------GAUGCCG----CGGCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 47899 0.69 0.444981
Target:  5'- cGCcGCACUGCaGGCGaCgCGCaCGGC-CUCg -3'
miRNA:   3'- -CGuUGUGAUG-CCGC-G-GCG-GCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 20857 0.69 0.444981
Target:  5'- aGCucgcCGCUGCGGUGCCGCCcACcCa- -3'
miRNA:   3'- -CGuu--GUGAUGCCGCGGCGGcUGaGag -5'
11601 5' -56.6 NC_003085.1 + 40377 0.69 0.453816
Target:  5'- cGCGGCGCUGacgccucUGGCGCUGgCCGGCaUC-Ca -3'
miRNA:   3'- -CGUUGUGAU-------GCCGCGGC-GGCUG-AGaG- -5'
11601 5' -56.6 NC_003085.1 + 32246 0.69 0.454803
Target:  5'- cGCGugcuCACcaGCGGCGCUGaCCaACUCUCc -3'
miRNA:   3'- -CGUu---GUGa-UGCCGCGGC-GGcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 41537 0.69 0.454804
Target:  5'- cGCAACGaguUGGUGCaCGCCGACaggacgcgCUCg -3'
miRNA:   3'- -CGUUGUgauGCCGCG-GCGGCUGa-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 9144 0.68 0.464742
Target:  5'- aGCGGCACcugGCGGagcuCGCCGCCGcGCagUCc -3'
miRNA:   3'- -CGUUGUGa--UGCC----GCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 44790 0.68 0.484949
Target:  5'- cGCAACu---CGGCGCCGUgaaaGGCUCg- -3'
miRNA:   3'- -CGUUGugauGCCGCGGCGg---CUGAGag -5'
11601 5' -56.6 NC_003085.1 + 1487 0.68 0.49521
Target:  5'- cGCGACuuGCUcgacGCGGC-CCGuCCGGCgCUCg -3'
miRNA:   3'- -CGUUG--UGA----UGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 9983 0.68 0.516017
Target:  5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3'
miRNA:   3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.