miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 21106 0.67 0.526553
Target:  5'- cGCGcCACgGCGGUGCCGCgGAUgg-Cg -3'
miRNA:   3'- -CGUuGUGaUGCCGCGGCGgCUGagaG- -5'
11601 5' -56.6 NC_003085.1 + 13003 0.67 0.547857
Target:  5'- aGUGGCACUACcucgccaugaGGCGCCGCC--CUC-Cg -3'
miRNA:   3'- -CGUUGUGAUG----------CCGCGGCGGcuGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 28620 0.67 0.569424
Target:  5'- aGCGGCgaGCU-CGGCGCCgGUCGcCUCa- -3'
miRNA:   3'- -CGUUG--UGAuGCCGCGG-CGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 24225 0.67 0.552151
Target:  5'- cGCGgagcGCACcaggGCGGCGCCggugaugagguaccaGCCGuACUgCUCg -3'
miRNA:   3'- -CGU----UGUGa---UGCCGCGG---------------CGGC-UGA-GAG- -5'
11601 5' -56.6 NC_003085.1 + 18659 0.67 0.537169
Target:  5'- cGCggUgauuGCUGCGGCG-CGCucaCGGCUCUUc -3'
miRNA:   3'- -CGuuG----UGAUGCCGCgGCG---GCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 37214 0.67 0.569424
Target:  5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3'
miRNA:   3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5'
11601 5' -56.6 NC_003085.1 + 1487 0.68 0.49521
Target:  5'- cGCGACuuGCUcgacGCGGC-CCGuCCGGCgCUCg -3'
miRNA:   3'- -CGUUG--UGA----UGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 1070 0.68 0.516018
Target:  5'- gGCAgACAaUGCGGCGCUGCuCGcCgcgCUCa -3'
miRNA:   3'- -CGU-UGUgAUGCCGCGGCG-GCuGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 2369 0.68 0.516017
Target:  5'- uGCGAgGCcGCGGCG-CGCgaGCUCUCg -3'
miRNA:   3'- -CGUUgUGaUGCCGCgGCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 26461 0.68 0.516018
Target:  5'- cCAGgACUGCGGCGCgCGCac-CUCUg -3'
miRNA:   3'- cGUUgUGAUGCCGCG-GCGgcuGAGAg -5'
11601 5' -56.6 NC_003085.1 + 48396 0.68 0.517067
Target:  5'- aGCAGCGCcgcauugucugccuCGGCGgCGCUGGCUucCUCc -3'
miRNA:   3'- -CGUUGUGau------------GCCGCgGCGGCUGA--GAG- -5'
11601 5' -56.6 NC_003085.1 + 9983 0.68 0.516017
Target:  5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3'
miRNA:   3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 44790 0.68 0.484949
Target:  5'- cGCAACu---CGGCGCCGUgaaaGGCUCg- -3'
miRNA:   3'- -CGUUGugauGCCGCGGCGg---CUGAGag -5'
11601 5' -56.6 NC_003085.1 + 9144 0.68 0.464742
Target:  5'- aGCGGCACcugGCGGagcuCGCCGCCGcGCagUCc -3'
miRNA:   3'- -CGUUGUGa--UGCC----GCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 47899 0.69 0.444981
Target:  5'- cGCcGCACUGCaGGCGaCgCGCaCGGC-CUCg -3'
miRNA:   3'- -CGuUGUGAUG-CCGC-G-GCG-GCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 40377 0.69 0.453816
Target:  5'- cGCGGCGCUGacgccucUGGCGCUGgCCGGCaUC-Ca -3'
miRNA:   3'- -CGUUGUGAU-------GCCGCGGC-GGCUG-AGaG- -5'
11601 5' -56.6 NC_003085.1 + 32246 0.69 0.454803
Target:  5'- cGCGugcuCACcaGCGGCGCUGaCCaACUCUCc -3'
miRNA:   3'- -CGUu---GUGa-UGCCGCGGC-GGcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 20857 0.69 0.444981
Target:  5'- aGCucgcCGCUGCGGUGCCGCCcACcCa- -3'
miRNA:   3'- -CGuu--GUGAUGCCGCGGCGGcUGaGag -5'
11601 5' -56.6 NC_003085.1 + 40668 0.69 0.406925
Target:  5'- cGCAAC-CUcGCGGaGCCGCCGGCg--- -3'
miRNA:   3'- -CGUUGuGA-UGCCgCGGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 41537 0.69 0.454804
Target:  5'- cGCAACGaguUGGUGCaCGCCGACaggacgcgCUCg -3'
miRNA:   3'- -CGUUGUgauGCCGCG-GCGGCUGa-------GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.