miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 38895 1.12 0.000414
Target:  5'- uGCAACACUACGGCGCCGCCGACUCUCg -3'
miRNA:   3'- -CGUUGUGAUGCCGCGGCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 39276 0.78 0.120401
Target:  5'- cGCGcCuccuCUACGGCGCUGCgGugUCUCg -3'
miRNA:   3'- -CGUuGu---GAUGCCGCGGCGgCugAGAG- -5'
11601 5' -56.6 NC_003085.1 + 7645 0.75 0.181946
Target:  5'- -gGGCGCUugGGCGgCGCCGACa--- -3'
miRNA:   3'- cgUUGUGAugCCGCgGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 45223 0.74 0.219282
Target:  5'- cGCGaaGCGCUGCGGC-CCGgCUGACgCUCa -3'
miRNA:   3'- -CGU--UGUGAUGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 11770 0.73 0.243434
Target:  5'- aCGACGgUACGGCGgCGCCGcGCUC-Cg -3'
miRNA:   3'- cGUUGUgAUGCCGCgGCGGC-UGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 28802 0.73 0.262968
Target:  5'- uGCGGCGCgAgGaGUGCCGCUGGCUCa- -3'
miRNA:   3'- -CGUUGUGaUgC-CGCGGCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 10459 0.73 0.262968
Target:  5'- cGCGGCGCUuuGGCGCCccucggcugGCCGAC-CUg -3'
miRNA:   3'- -CGUUGUGAugCCGCGG---------CGGCUGaGAg -5'
11601 5' -56.6 NC_003085.1 + 31449 0.72 0.283757
Target:  5'- aGCgAGC-CUugGGCGCCaGuCCGcGCUCUCg -3'
miRNA:   3'- -CG-UUGuGAugCCGCGG-C-GGC-UGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 38086 0.72 0.290969
Target:  5'- gGCAGCGCaggugucCGGCGCCGCC-ACcaucgUCUCg -3'
miRNA:   3'- -CGUUGUGau-----GCCGCGGCGGcUG-----AGAG- -5'
11601 5' -56.6 NC_003085.1 + 557 0.72 0.290969
Target:  5'- aCGGCGCgagGCGGCGCgGCUGGCgggccaaugCUCc -3'
miRNA:   3'- cGUUGUGa--UGCCGCGgCGGCUGa--------GAG- -5'
11601 5' -56.6 NC_003085.1 + 33112 0.72 0.298325
Target:  5'- gGUGGCGCUGuCGaacgcucccuaGCGCCGCaGGCUCUCg -3'
miRNA:   3'- -CGUUGUGAU-GC-----------CGCGGCGgCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 36997 0.72 0.305824
Target:  5'- aGCAggGCACUGCuGGCGCCccagcGCUGACcUUCa -3'
miRNA:   3'- -CGU--UGUGAUG-CCGCGG-----CGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 37681 0.71 0.329183
Target:  5'- cCGACACgcccggagcGCGGCGCCGCCGuACcgUCg -3'
miRNA:   3'- cGUUGUGa--------UGCCGCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 2735 0.71 0.337256
Target:  5'- gGCAGCGCgcgcgaaGGCGCUGCCcaagGACUC-Cg -3'
miRNA:   3'- -CGUUGUGaug----CCGCGGCGG----CUGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 27342 0.71 0.345473
Target:  5'- cCGGCuGCUGCGGCGCCG--GGCUCUg -3'
miRNA:   3'- cGUUG-UGAUGCCGCGGCggCUGAGAg -5'
11601 5' -56.6 NC_003085.1 + 3864 0.71 0.345473
Target:  5'- aCGGCGCgucgACGGCGCgccCGCCGuCUgUCg -3'
miRNA:   3'- cGUUGUGa---UGCCGCG---GCGGCuGAgAG- -5'
11601 5' -56.6 NC_003085.1 + 25438 0.71 0.35299
Target:  5'- aGCAGCACUGagcggcggcCGGUuucuggguggucgGCCGCCG-CUCUUc -3'
miRNA:   3'- -CGUUGUGAU---------GCCG-------------CGGCGGCuGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 34787 0.71 0.353833
Target:  5'- cCAGCGCcACGGCGCCuccaaguccuuGCCGcgcuGCUUUCg -3'
miRNA:   3'- cGUUGUGaUGCCGCGG-----------CGGC----UGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 26718 0.71 0.353833
Target:  5'- cGCAGgGCggugACGGCGCggCGCCGguGCUgUCa -3'
miRNA:   3'- -CGUUgUGa---UGCCGCG--GCGGC--UGAgAG- -5'
11601 5' -56.6 NC_003085.1 + 26603 0.71 0.353833
Target:  5'- cCAcCugUG-GGCGCUGCCGgACUCUCc -3'
miRNA:   3'- cGUuGugAUgCCGCGGCGGC-UGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.