miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 557 0.72 0.290969
Target:  5'- aCGGCGCgagGCGGCGCgGCUGGCgggccaaugCUCc -3'
miRNA:   3'- cGUUGUGa--UGCCGCGgCGGCUGa--------GAG- -5'
11601 5' -56.6 NC_003085.1 + 1070 0.68 0.516018
Target:  5'- gGCAgACAaUGCGGCGCUGCuCGcCgcgCUCa -3'
miRNA:   3'- -CGU-UGUgAUGCCGCGGCG-GCuGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 1487 0.68 0.49521
Target:  5'- cGCGACuuGCUcgacGCGGC-CCGuCCGGCgCUCg -3'
miRNA:   3'- -CGUUG--UGA----UGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 2080 0.66 0.624086
Target:  5'- gGUGACGCgACGaGCgcaGCCGCCGcAC-CUCg -3'
miRNA:   3'- -CGUUGUGaUGC-CG---CGGCGGC-UGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 2369 0.68 0.516017
Target:  5'- uGCGAgGCcGCGGCG-CGCgaGCUCUCg -3'
miRNA:   3'- -CGUUgUGaUGCCGCgGCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 2735 0.71 0.337256
Target:  5'- gGCAGCGCgcgcgaaGGCGCUGCCcaagGACUC-Cg -3'
miRNA:   3'- -CGUUGUGaug----CCGCGGCGG----CUGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 3864 0.71 0.345473
Target:  5'- aCGGCGCgucgACGGCGCgccCGCCGuCUgUCg -3'
miRNA:   3'- cGUUGUGa---UGCCGCG---GCGGCuGAgAG- -5'
11601 5' -56.6 NC_003085.1 + 5160 0.66 0.602136
Target:  5'- cGCAACACcucGCGGCGaUUGCUG-CUCg- -3'
miRNA:   3'- -CGUUGUGa--UGCCGC-GGCGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 7645 0.75 0.181946
Target:  5'- -gGGCGCUugGGCGgCGCCGACa--- -3'
miRNA:   3'- cgUUGUGAugCCGCgGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 8185 0.7 0.397734
Target:  5'- cGCAGCGCUuCGGCGUCucgguGUCGACggUCg -3'
miRNA:   3'- -CGUUGUGAuGCCGCGG-----CGGCUGagAG- -5'
11601 5' -56.6 NC_003085.1 + 9144 0.68 0.464742
Target:  5'- aGCGGCACcugGCGGagcuCGCCGCCGcGCagUCc -3'
miRNA:   3'- -CGUUGUGa--UGCC----GCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 9983 0.68 0.516017
Target:  5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3'
miRNA:   3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 10459 0.73 0.262968
Target:  5'- cGCGGCGCUuuGGCGCCccucggcugGCCGAC-CUg -3'
miRNA:   3'- -CGUUGUGAugCCGCGG---------CGGCUGaGAg -5'
11601 5' -56.6 NC_003085.1 + 10464 0.66 0.587919
Target:  5'- cGCGACGuagcgggcucgaauCUGCGGgGCCGucucaCCGACgauggCUCc -3'
miRNA:   3'- -CGUUGU--------------GAUGCCgCGGC-----GGCUGa----GAG- -5'
11601 5' -56.6 NC_003085.1 + 11770 0.73 0.243434
Target:  5'- aCGACGgUACGGCGgCGCCGcGCUC-Cg -3'
miRNA:   3'- cGUUGUgAUGCCGCgGCGGC-UGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 13003 0.67 0.547857
Target:  5'- aGUGGCACUACcucgccaugaGGCGCCGCC--CUC-Cg -3'
miRNA:   3'- -CGUUGUGAUG----------CCGCGGCGGcuGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 13466 0.66 0.591194
Target:  5'- cGCGGuCAUcGCGGCGCgGCuCGAC-CUg -3'
miRNA:   3'- -CGUU-GUGaUGCCGCGgCG-GCUGaGAg -5'
11601 5' -56.6 NC_003085.1 + 14900 0.7 0.370106
Target:  5'- -uGGCugUGCGGCGCacgcggGCCGGCUgguggcgCUCg -3'
miRNA:   3'- cgUUGugAUGCCGCGg-----CGGCUGA-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 17232 0.7 0.379758
Target:  5'- -gAGCAC-GCGGCGCC-CCGuGCUCUg -3'
miRNA:   3'- cgUUGUGaUGCCGCGGcGGC-UGAGAg -5'
11601 5' -56.6 NC_003085.1 + 18659 0.67 0.537169
Target:  5'- cGCggUgauuGCUGCGGCG-CGCucaCGGCUCUUc -3'
miRNA:   3'- -CGuuG----UGAUGCCGCgGCG---GCUGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.