miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 2369 0.68 0.516017
Target:  5'- uGCGAgGCcGCGGCG-CGCgaGCUCUCg -3'
miRNA:   3'- -CGUUgUGaUGCCGCgGCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 8185 0.7 0.397734
Target:  5'- cGCAGCGCUuCGGCGUCucgguGUCGACggUCg -3'
miRNA:   3'- -CGUUGUGAuGCCGCGG-----CGGCUGagAG- -5'
11601 5' -56.6 NC_003085.1 + 40668 0.69 0.406925
Target:  5'- cGCAAC-CUcGCGGaGCCGCCGGCg--- -3'
miRNA:   3'- -CGUUGuGA-UGCCgCGGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 20857 0.69 0.444981
Target:  5'- aGCucgcCGCUGCGGUGCCGCCcACcCa- -3'
miRNA:   3'- -CGuu--GUGAUGCCGCGGCGGcUGaGag -5'
11601 5' -56.6 NC_003085.1 + 40377 0.69 0.453816
Target:  5'- cGCGGCGCUGacgccucUGGCGCUGgCCGGCaUC-Ca -3'
miRNA:   3'- -CGUUGUGAU-------GCCGCGGC-GGCUG-AGaG- -5'
11601 5' -56.6 NC_003085.1 + 32246 0.69 0.454803
Target:  5'- cGCGugcuCACcaGCGGCGCUGaCCaACUCUCc -3'
miRNA:   3'- -CGUu---GUGa-UGCCGCGGC-GGcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 9144 0.68 0.464742
Target:  5'- aGCGGCACcugGCGGagcuCGCCGCCGcGCagUCc -3'
miRNA:   3'- -CGUUGUGa--UGCC----GCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 44790 0.68 0.484949
Target:  5'- cGCAACu---CGGCGCCGUgaaaGGCUCg- -3'
miRNA:   3'- -CGUUGugauGCCGCGGCGg---CUGAGag -5'
11601 5' -56.6 NC_003085.1 + 9983 0.68 0.516017
Target:  5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3'
miRNA:   3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 39567 0.7 0.370976
Target:  5'- cGCAGCugcguACUACGGCGCCaCUGGCaagCUg -3'
miRNA:   3'- -CGUUG-----UGAUGCCGCGGcGGCUGa--GAg -5'
11601 5' -56.6 NC_003085.1 + 26718 0.71 0.353833
Target:  5'- cGCAGgGCggugACGGCGCggCGCCGguGCUgUCa -3'
miRNA:   3'- -CGUUgUGa---UGCCGCG--GCGGC--UGAgAG- -5'
11601 5' -56.6 NC_003085.1 + 25438 0.71 0.35299
Target:  5'- aGCAGCACUGagcggcggcCGGUuucuggguggucgGCCGCCG-CUCUUc -3'
miRNA:   3'- -CGUUGUGAU---------GCCG-------------CGGCGGCuGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 39276 0.78 0.120401
Target:  5'- cGCGcCuccuCUACGGCGCUGCgGugUCUCg -3'
miRNA:   3'- -CGUuGu---GAUGCCGCGGCGgCugAGAG- -5'
11601 5' -56.6 NC_003085.1 + 11770 0.73 0.243434
Target:  5'- aCGACGgUACGGCGgCGCCGcGCUC-Cg -3'
miRNA:   3'- cGUUGUgAUGCCGCgGCGGC-UGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 10459 0.73 0.262968
Target:  5'- cGCGGCGCUuuGGCGCCccucggcugGCCGAC-CUg -3'
miRNA:   3'- -CGUUGUGAugCCGCGG---------CGGCUGaGAg -5'
11601 5' -56.6 NC_003085.1 + 28802 0.73 0.262968
Target:  5'- uGCGGCGCgAgGaGUGCCGCUGGCUCa- -3'
miRNA:   3'- -CGUUGUGaUgC-CGCGGCGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 38086 0.72 0.290969
Target:  5'- gGCAGCGCaggugucCGGCGCCGCC-ACcaucgUCUCg -3'
miRNA:   3'- -CGUUGUGau-----GCCGCGGCGGcUG-----AGAG- -5'
11601 5' -56.6 NC_003085.1 + 33112 0.72 0.298325
Target:  5'- gGUGGCGCUGuCGaacgcucccuaGCGCCGCaGGCUCUCg -3'
miRNA:   3'- -CGUUGUGAU-GC-----------CGCGGCGgCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 36997 0.72 0.305824
Target:  5'- aGCAggGCACUGCuGGCGCCccagcGCUGACcUUCa -3'
miRNA:   3'- -CGU--UGUGAUG-CCGCGG-----CGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 3864 0.71 0.345473
Target:  5'- aCGGCGCgucgACGGCGCgccCGCCGuCUgUCg -3'
miRNA:   3'- cGUUGUGa---UGCCGCG---GCGGCuGAgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.