miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 26122 0.66 0.635077
Target:  5'- gGCGGC-CgGCGGCGCUugGCCGGC-Ca- -3'
miRNA:   3'- -CGUUGuGaUGCCGCGG--CGGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 31478 0.69 0.435279
Target:  5'- cGCAGCuccgugccCUGCGGCccgcGCUGCCGGCgCUUc -3'
miRNA:   3'- -CGUUGu-------GAUGCCG----CGGCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 37050 0.69 0.4257
Target:  5'- cGgAGCGCaGCGGCcCCGCCGGgUCg- -3'
miRNA:   3'- -CgUUGUGaUGCCGcGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 7645 0.75 0.181946
Target:  5'- -gGGCGCUugGGCGgCGCCGACa--- -3'
miRNA:   3'- cgUUGUGAugCCGCgGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 5160 0.66 0.602136
Target:  5'- cGCAACACcucGCGGCGaUUGCUG-CUCg- -3'
miRNA:   3'- -CGUUGUGa--UGCCGC-GGCGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 26744 0.66 0.591195
Target:  5'- ----uGCUucuCGGCaGCCGCCgccaggGACUCUCu -3'
miRNA:   3'- cguugUGAu--GCCG-CGGCGG------CUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 28620 0.67 0.569424
Target:  5'- aGCGGCgaGCU-CGGCGCCgGUCGcCUCa- -3'
miRNA:   3'- -CGUUG--UGAuGCCGCGG-CGGCuGAGag -5'
11601 5' -56.6 NC_003085.1 + 24225 0.67 0.552151
Target:  5'- cGCGgagcGCACcaggGCGGCGCCggugaugagguaccaGCCGuACUgCUCg -3'
miRNA:   3'- -CGU----UGUGa---UGCCGCGG---------------CGGC-UGA-GAG- -5'
11601 5' -56.6 NC_003085.1 + 21106 0.67 0.526553
Target:  5'- cGCGcCACgGCGGUGCCGCgGAUgg-Cg -3'
miRNA:   3'- -CGUuGUGaUGCCGCGGCGgCUGagaG- -5'
11601 5' -56.6 NC_003085.1 + 47899 0.69 0.444981
Target:  5'- cGCcGCACUGCaGGCGaCgCGCaCGGC-CUCg -3'
miRNA:   3'- -CGuUGUGAUG-CCGC-G-GCG-GCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 1070 0.68 0.516018
Target:  5'- gGCAgACAaUGCGGCGCUGCuCGcCgcgCUCa -3'
miRNA:   3'- -CGU-UGUgAUGCCGCGGCG-GCuGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 18659 0.67 0.537169
Target:  5'- cGCggUgauuGCUGCGGCG-CGCucaCGGCUCUUc -3'
miRNA:   3'- -CGuuG----UGAUGCCGCgGCG---GCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 48527 0.66 0.635077
Target:  5'- -uGGCACc-CGGaCGCgGCCGACgCUCc -3'
miRNA:   3'- cgUUGUGauGCC-GCGgCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 1487 0.68 0.49521
Target:  5'- cGCGACuuGCUcgacGCGGC-CCGuCCGGCgCUCg -3'
miRNA:   3'- -CGUUG--UGA----UGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 42244 0.66 0.635077
Target:  5'- gGCAGCGCU---GCGCCauccacauGCCGAagguaCUCUCg -3'
miRNA:   3'- -CGUUGUGAugcCGCGG--------CGGCU-----GAGAG- -5'
11601 5' -56.6 NC_003085.1 + 13003 0.67 0.547857
Target:  5'- aGUGGCACUACcucgccaugaGGCGCCGCC--CUC-Cg -3'
miRNA:   3'- -CGUUGUGAUG----------CCGCGGCGGcuGAGaG- -5'
11601 5' -56.6 NC_003085.1 + 41537 0.69 0.454804
Target:  5'- cGCAACGaguUGGUGCaCGCCGACaggacgcgCUCg -3'
miRNA:   3'- -CGUUGUgauGCCGCG-GCGGCUGa-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 34272 0.69 0.435279
Target:  5'- cGCGGCGCU--GGCGCa-CCGGCUCa- -3'
miRNA:   3'- -CGUUGUGAugCCGCGgcGGCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 38052 0.66 0.635077
Target:  5'- aGCAGcCACcgcgGCGGUGCgucaGCCGGCgguagcgCUCc -3'
miRNA:   3'- -CGUU-GUGa---UGCCGCGg---CGGCUGa------GAG- -5'
11601 5' -56.6 NC_003085.1 + 10464 0.66 0.587919
Target:  5'- cGCGACGuagcgggcucgaauCUGCGGgGCCGucucaCCGACgauggCUCc -3'
miRNA:   3'- -CGUUGU--------------GAUGCCgCGGC-----GGCUGa----GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.