miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 48527 0.66 0.635077
Target:  5'- -uGGCACc-CGGaCGCgGCCGACgCUCc -3'
miRNA:   3'- cgUUGUGauGCC-GCGgCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 48396 0.68 0.517067
Target:  5'- aGCAGCGCcgcauugucugccuCGGCGgCGCUGGCUucCUCc -3'
miRNA:   3'- -CGUUGUGau------------GCCGCgGCGGCUGA--GAG- -5'
11601 5' -56.6 NC_003085.1 + 48062 0.66 0.633977
Target:  5'- cGCGAUgauucggGCUcCGGUGUuuuCGUCGAUUCUCa -3'
miRNA:   3'- -CGUUG-------UGAuGCCGCG---GCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 47899 0.69 0.444981
Target:  5'- cGCcGCACUGCaGGCGaCgCGCaCGGC-CUCg -3'
miRNA:   3'- -CGuUGUGAUG-CCGC-G-GCG-GCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 47873 0.67 0.537168
Target:  5'- aGCGAgACgucaGCGcGUGCgGCCuGCUCUCu -3'
miRNA:   3'- -CGUUgUGa---UGC-CGCGgCGGcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 46076 0.66 0.624086
Target:  5'- cGCGucGCGCUuaccgACGGCgaGCCGCUGGgUCg- -3'
miRNA:   3'- -CGU--UGUGA-----UGCCG--CGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 45223 0.74 0.219282
Target:  5'- cGCGaaGCGCUGCGGC-CCGgCUGACgCUCa -3'
miRNA:   3'- -CGU--UGUGAUGCCGcGGC-GGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 44790 0.68 0.484949
Target:  5'- cGCAACu---CGGCGCCGUgaaaGGCUCg- -3'
miRNA:   3'- -CGUUGugauGCCGCGGCGg---CUGAGag -5'
11601 5' -56.6 NC_003085.1 + 44624 0.66 0.635076
Target:  5'- cGCcGCACUauuGCGGCGagGuuGGCUCa- -3'
miRNA:   3'- -CGuUGUGA---UGCCGCggCggCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 42244 0.66 0.635077
Target:  5'- gGCAGCGCU---GCGCCauccacauGCCGAagguaCUCUCg -3'
miRNA:   3'- -CGUUGUGAugcCGCGG--------CGGCU-----GAGAG- -5'
11601 5' -56.6 NC_003085.1 + 42083 0.69 0.406925
Target:  5'- --cACGCg--GGCGCCGUCGGC-CUCg -3'
miRNA:   3'- cguUGUGaugCCGCGGCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 41817 0.7 0.362334
Target:  5'- cCAGgACU-CGGCGCCGuuGAUgcgCUCc -3'
miRNA:   3'- cGUUgUGAuGCCGCGGCggCUGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 41537 0.69 0.454804
Target:  5'- cGCAACGaguUGGUGCaCGCCGACaggacgcgCUCg -3'
miRNA:   3'- -CGUUGUgauGCCGCG-GCGGCUGa-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 40668 0.69 0.406925
Target:  5'- cGCAAC-CUcGCGGaGCCGCCGGCg--- -3'
miRNA:   3'- -CGUUGuGA-UGCCgCGGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 40377 0.69 0.453816
Target:  5'- cGCGGCGCUGacgccucUGGCGCUGgCCGGCaUC-Ca -3'
miRNA:   3'- -CGUUGUGAU-------GCCGCGGC-GGCUG-AGaG- -5'
11601 5' -56.6 NC_003085.1 + 39567 0.7 0.370976
Target:  5'- cGCAGCugcguACUACGGCGCCaCUGGCaagCUg -3'
miRNA:   3'- -CGUUG-----UGAUGCCGCGGcGGCUGa--GAg -5'
11601 5' -56.6 NC_003085.1 + 39276 0.78 0.120401
Target:  5'- cGCGcCuccuCUACGGCGCUGCgGugUCUCg -3'
miRNA:   3'- -CGUuGu---GAUGCCGCGGCGgCugAGAG- -5'
11601 5' -56.6 NC_003085.1 + 39154 0.66 0.624086
Target:  5'- gGCAAaggGCUACGGCGUCGUCugGACg--- -3'
miRNA:   3'- -CGUUg--UGAUGCCGCGGCGG--CUGagag -5'
11601 5' -56.6 NC_003085.1 + 38895 1.12 0.000414
Target:  5'- uGCAACACUACGGCGCCGCCGACUCUCg -3'
miRNA:   3'- -CGUUGUGAUGCCGCGGCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 38566 0.66 0.635076
Target:  5'- aGCGACGCggaGGgGuuGCa-ACUCUCg -3'
miRNA:   3'- -CGUUGUGaugCCgCggCGgcUGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.