miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 3' -60.3 NC_003085.1 + 39042 1.03 0.000678
Target:  5'- uGGGCgAGCGCUGCGCGUACCUGCUGCUg -3'
miRNA:   3'- -CCCG-UCGCGACGCGCAUGGACGACGA- -5'
11602 3' -60.3 NC_003085.1 + 25806 0.8 0.042774
Target:  5'- uGGGCGGCGUucgccUGCGCG-GCCUGCUcGCg -3'
miRNA:   3'- -CCCGUCGCG-----ACGCGCaUGGACGA-CGa -5'
11602 3' -60.3 NC_003085.1 + 7652 0.79 0.046645
Target:  5'- uGGGCGGCGCcgacaUGCGCGaGCCUG-UGCUg -3'
miRNA:   3'- -CCCGUCGCG-----ACGCGCaUGGACgACGA- -5'
11602 3' -60.3 NC_003085.1 + 11606 0.75 0.092504
Target:  5'- aGGGCGGCGCgaagGgGCuGUGCagggGCUGCUa -3'
miRNA:   3'- -CCCGUCGCGa---CgCG-CAUGga--CGACGA- -5'
11602 3' -60.3 NC_003085.1 + 25755 0.75 0.101764
Target:  5'- gGGGCcgucuugacggaggaGGCuGCUGCGCGgGCCcGCUGCg -3'
miRNA:   3'- -CCCG---------------UCG-CGACGCGCaUGGaCGACGa -5'
11602 3' -60.3 NC_003085.1 + 28107 0.74 0.103487
Target:  5'- uGGGCAGCGC-GCGCcagaagcagGUGCaguUGCUGCg -3'
miRNA:   3'- -CCCGUCGCGaCGCG---------CAUGg--ACGACGa -5'
11602 3' -60.3 NC_003085.1 + 42242 0.72 0.156467
Target:  5'- gGGGCAGCGCUGCGCcauCCacaUGCc -3'
miRNA:   3'- -CCCGUCGCGACGCGcauGGacgACGa -5'
11602 3' -60.3 NC_003085.1 + 48619 0.72 0.159893
Target:  5'- cGGGCAGCGCgacgugagagacGCGCucgacgACCUGCgGCg -3'
miRNA:   3'- -CCCGUCGCGa-----------CGCGca----UGGACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 46727 0.72 0.16076
Target:  5'- uGGGCAGCGCcuucgcGCGCGcUGCCaGCcGCc -3'
miRNA:   3'- -CCCGUCGCGa-----CGCGC-AUGGaCGaCGa -5'
11602 3' -60.3 NC_003085.1 + 26220 0.71 0.188807
Target:  5'- cGGGCGGCGCggugcgaaGCGCGgcgGCCgucUGgaGCa -3'
miRNA:   3'- -CCCGUCGCGa-------CGCGCa--UGG---ACgaCGa -5'
11602 3' -60.3 NC_003085.1 + 27483 0.71 0.19388
Target:  5'- aGGG-AGCGCUGC-CGggcACCUGCUGa- -3'
miRNA:   3'- -CCCgUCGCGACGcGCa--UGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 22199 0.7 0.209822
Target:  5'- aGGCcgaGGUGCaGgGCG-ACCUGCUGCg -3'
miRNA:   3'- cCCG---UCGCGaCgCGCaUGGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 26721 0.7 0.215382
Target:  5'- aGGGCGGUGacgGCGCGgcGCCggUGCUGUc -3'
miRNA:   3'- -CCCGUCGCga-CGCGCa-UGG--ACGACGa -5'
11602 3' -60.3 NC_003085.1 + 10459 0.7 0.227469
Target:  5'- -cGCGGCGCUuugGCGCcccucggcuggccgACCUGCUGCg -3'
miRNA:   3'- ccCGUCGCGA---CGCGca------------UGGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 19218 0.69 0.238895
Target:  5'- gGGGCugGGCGCcGCGCaagGCCUGC-GCc -3'
miRNA:   3'- -CCCG--UCGCGaCGCGca-UGGACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 26004 0.69 0.251437
Target:  5'- -cGCuGCGCUGggccuccgucaUGCGUcCCUGCUGCg -3'
miRNA:   3'- ccCGuCGCGAC-----------GCGCAuGGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 18356 0.69 0.267198
Target:  5'- gGGGCGGUgcaggccguggagucGCugucccUGCGCGUGCCUGagggUGCg -3'
miRNA:   3'- -CCCGUCG---------------CG------ACGCGCAUGGACg---ACGa -5'
11602 3' -60.3 NC_003085.1 + 39257 0.68 0.27058
Target:  5'- uGGGCcgcagcauGUGCUGCGCGccuCCUcuacggcGCUGCg -3'
miRNA:   3'- -CCCGu-------CGCGACGCGCau-GGA-------CGACGa -5'
11602 3' -60.3 NC_003085.1 + 36452 0.68 0.271261
Target:  5'- aGGGCGGCGCcucaugGCGagguaGUGCCacugGCgGCUu -3'
miRNA:   3'- -CCCGUCGCGa-----CGCg----CAUGGa---CGaCGA- -5'
11602 3' -60.3 NC_003085.1 + 26045 0.68 0.285163
Target:  5'- uGGGCgaAGCGCUGCaUG-ACUcGCUGCUc -3'
miRNA:   3'- -CCCG--UCGCGACGcGCaUGGaCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.