Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11602 | 3' | -60.3 | NC_003085.1 | + | 37850 | 0.66 | 0.3972 |
Target: 5'- uGGUAGCGCUGCcuGCGcugGCCgGCcagacgucggaggUGCUg -3' miRNA: 3'- cCCGUCGCGACG--CGCa--UGGaCG-------------ACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 29187 | 0.68 | 0.295225 |
Target: 5'- uGGCAGCGCcGCGaggacgcggagcgcaCGcGCCUGCUGa- -3' miRNA: 3'- cCCGUCGCGaCGC---------------GCaUGGACGACga -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 30338 | 0.68 | 0.30706 |
Target: 5'- uGGCGGaCGCUGuCGCGgggcGCaCUGCgGCg -3' miRNA: 3'- cCCGUC-GCGAC-GCGCa---UG-GACGaCGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 45153 | 0.67 | 0.32236 |
Target: 5'- aGGuGCAGCGCUgGCGC-UACgUGCUcCUc -3' miRNA: 3'- -CC-CGUCGCGA-CGCGcAUGgACGAcGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 40326 | 0.67 | 0.346363 |
Target: 5'- cGGCaAGgGCUgGCGCGUGCCUcaGUggGCg -3' miRNA: 3'- cCCG-UCgCGA-CGCGCAUGGA--CGa-CGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 771 | 0.67 | 0.354643 |
Target: 5'- -cGCAGuUGCU-UGCG-GCCUGCUGCUg -3' miRNA: 3'- ccCGUC-GCGAcGCGCaUGGACGACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 10177 | 0.66 | 0.363063 |
Target: 5'- cGGGCGGacccgGCUGCaauGCGcgACCUGCUcacccGCg -3' miRNA: 3'- -CCCGUCg----CGACG---CGCa-UGGACGA-----CGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 11779 | 0.66 | 0.370758 |
Target: 5'- cGGCGGCGCcGCGCuccgggcGUGUCgGCUGCc -3' miRNA: 3'- cCCGUCGCGaCGCG-------CAUGGaCGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 21480 | 0.66 | 0.371619 |
Target: 5'- aGGGCGGC-CUGCGCG-GCgUGgUGg- -3' miRNA: 3'- -CCCGUCGcGACGCGCaUGgACgACga -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 12392 | 0.68 | 0.292322 |
Target: 5'- aGGGCcgGGUGCUGCugcucgacccgGCGggGCC-GCUGCg -3' miRNA: 3'- -CCCG--UCGCGACG-----------CGCa-UGGaCGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 11969 | 0.68 | 0.28801 |
Target: 5'- gGGGCGGCGUga-GCGgauugguccucuugGCCUGCgGCa -3' miRNA: 3'- -CCCGUCGCGacgCGCa-------------UGGACGaCGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 36452 | 0.68 | 0.271261 |
Target: 5'- aGGGCGGCGCcucaugGCGagguaGUGCCacugGCgGCUu -3' miRNA: 3'- -CCCGUCGCGa-----CGCg----CAUGGa---CGaCGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 11606 | 0.75 | 0.092504 |
Target: 5'- aGGGCGGCGCgaagGgGCuGUGCagggGCUGCUa -3' miRNA: 3'- -CCCGUCGCGa---CgCG-CAUGga--CGACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 28107 | 0.74 | 0.103487 |
Target: 5'- uGGGCAGCGC-GCGCcagaagcagGUGCaguUGCUGCg -3' miRNA: 3'- -CCCGUCGCGaCGCG---------CAUGg--ACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 46727 | 0.72 | 0.16076 |
Target: 5'- uGGGCAGCGCcuucgcGCGCGcUGCCaGCcGCc -3' miRNA: 3'- -CCCGUCGCGa-----CGCGC-AUGGaCGaCGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 22199 | 0.7 | 0.209822 |
Target: 5'- aGGCcgaGGUGCaGgGCG-ACCUGCUGCg -3' miRNA: 3'- cCCG---UCGCGaCgCGCaUGGACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 26721 | 0.7 | 0.215382 |
Target: 5'- aGGGCGGUGacgGCGCGgcGCCggUGCUGUc -3' miRNA: 3'- -CCCGUCGCga-CGCGCa-UGG--ACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 10459 | 0.7 | 0.227469 |
Target: 5'- -cGCGGCGCUuugGCGCcccucggcuggccgACCUGCUGCg -3' miRNA: 3'- ccCGUCGCGA---CGCGca------------UGGACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 18356 | 0.69 | 0.267198 |
Target: 5'- gGGGCGGUgcaggccguggagucGCugucccUGCGCGUGCCUGagggUGCg -3' miRNA: 3'- -CCCGUCG---------------CG------ACGCGCAUGGACg---ACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 39257 | 0.68 | 0.27058 |
Target: 5'- uGGGCcgcagcauGUGCUGCGCGccuCCUcuacggcGCUGCg -3' miRNA: 3'- -CCCGu-------CGCGACGCGCau-GGA-------CGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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