miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 3' -60.3 NC_003085.1 + 24238 0.66 0.416417
Target:  5'- aGGGCGGCGCcgGUGaugagGUACCaGCcguacUGCUc -3'
miRNA:   3'- -CCCGUCGCGa-CGCg----CAUGGaCG-----ACGA- -5'
11602 3' -60.3 NC_003085.1 + 48619 0.72 0.159893
Target:  5'- cGGGCAGCGCgacgugagagacGCGCucgacgACCUGCgGCg -3'
miRNA:   3'- -CCCGUCGCGa-----------CGCGca----UGGACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 25755 0.75 0.101764
Target:  5'- gGGGCcgucuugacggaggaGGCuGCUGCGCGgGCCcGCUGCg -3'
miRNA:   3'- -CCCG---------------UCG-CGACGCGCaUGGaCGACGa -5'
11602 3' -60.3 NC_003085.1 + 25806 0.8 0.042774
Target:  5'- uGGGCGGCGUucgccUGCGCG-GCCUGCUcGCg -3'
miRNA:   3'- -CCCGUCGCG-----ACGCGCaUGGACGA-CGa -5'
11602 3' -60.3 NC_003085.1 + 28718 0.66 0.389141
Target:  5'- cGGGCAGCagccgguccuGgaGgGCGUacuccagcGCCUGCUGg- -3'
miRNA:   3'- -CCCGUCG----------CgaCgCGCA--------UGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 34269 0.66 0.371619
Target:  5'- cGGcGCGGCGCUG-GCGcACCgGCUcaGCc -3'
miRNA:   3'- -CC-CGUCGCGACgCGCaUGGaCGA--CGa -5'
11602 3' -60.3 NC_003085.1 + 11106 0.67 0.341461
Target:  5'- cGGCGGCauucgugcccaggaaGUUGCGCGUGCCagGCccgaGCUu -3'
miRNA:   3'- cCCGUCG---------------CGACGCGCAUGGa-CGa---CGA- -5'
11602 3' -60.3 NC_003085.1 + 35939 0.67 0.330221
Target:  5'- gGGGUAGCGCuUGCGgagcuucucgaCGUucGCC-GCUGCc -3'
miRNA:   3'- -CCCGUCGCG-ACGC-----------GCA--UGGaCGACGa -5'
11602 3' -60.3 NC_003085.1 + 36371 0.68 0.292322
Target:  5'- --uCAGCGCgGCGUGccaguuCCUGCUGCa -3'
miRNA:   3'- cccGUCGCGaCGCGCau----GGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 26220 0.71 0.188807
Target:  5'- cGGGCGGCGCggugcgaaGCGCGgcgGCCgucUGgaGCa -3'
miRNA:   3'- -CCCGUCGCGa-------CGCGCa--UGG---ACgaCGa -5'
11602 3' -60.3 NC_003085.1 + 26004 0.69 0.251437
Target:  5'- -cGCuGCGCUGggccuccgucaUGCGUcCCUGCUGCg -3'
miRNA:   3'- ccCGuCGCGAC-----------GCGCAuGGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 42608 0.68 0.292322
Target:  5'- cGGGUAGUGCUGCGCG-GCUUuC-GCg -3'
miRNA:   3'- -CCCGUCGCGACGCGCaUGGAcGaCGa -5'
11602 3' -60.3 NC_003085.1 + 3902 0.66 0.414562
Target:  5'- aGGCcGCGCUGCGCGaggaguugacacGCCagGCUcGCg -3'
miRNA:   3'- cCCGuCGCGACGCGCa-----------UGGa-CGA-CGa -5'
11602 3' -60.3 NC_003085.1 + 19218 0.69 0.238895
Target:  5'- gGGGCugGGCGCcGCGCaagGCCUGC-GCc -3'
miRNA:   3'- -CCCG--UCGCGaCGCGca-UGGACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 14926 0.66 0.407195
Target:  5'- uGGUGGCGCU-CGCG-GCCgcugUGUUGCUg -3'
miRNA:   3'- cCCGUCGCGAcGCGCaUGG----ACGACGA- -5'
11602 3' -60.3 NC_003085.1 + 2734 0.67 0.32236
Target:  5'- uGGCAGCGC-GCGCGaagGC--GCUGCc -3'
miRNA:   3'- cCCGUCGCGaCGCGCa--UGgaCGACGa -5'
11602 3' -60.3 NC_003085.1 + 27483 0.71 0.19388
Target:  5'- aGGG-AGCGCUGC-CGggcACCUGCUGa- -3'
miRNA:   3'- -CCCgUCGCGACGcGCa--UGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 42242 0.72 0.156467
Target:  5'- gGGGCAGCGCUGCGCcauCCacaUGCc -3'
miRNA:   3'- -CCCGUCGCGACGCGcauGGacgACGa -5'
11602 3' -60.3 NC_003085.1 + 12457 0.66 0.407195
Target:  5'- aGGuCAGCGCUgggGCGCcagcaGUGCCcUGCUGg- -3'
miRNA:   3'- cCC-GUCGCGA---CGCG-----CAUGG-ACGACga -5'
11602 3' -60.3 NC_003085.1 + 27358 0.66 0.363063
Target:  5'- cGGGCucUGCUGgGCG-GCCUGCuucUGCg -3'
miRNA:   3'- -CCCGucGCGACgCGCaUGGACG---ACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.