Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11604 | 3' | -56.7 | NC_003085.1 | + | 39725 | 1.14 | 0.000262 |
Target: 5'- aGCGCAAGGUGGAUGAGGACCAGCGCCg -3' miRNA: 3'- -CGCGUUCCACCUACUCCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 9049 | 0.82 | 0.059801 |
Target: 5'- cGCGCcuccgAAGGUGG-UGAGGaguuggaugccgGCCAGCGCCa -3' miRNA: 3'- -CGCG-----UUCCACCuACUCC------------UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 30713 | 0.82 | 0.061555 |
Target: 5'- gGCGCAAGGgGGAaGcGGACCGGCGUCc -3' miRNA: 3'- -CGCGUUCCaCCUaCuCCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 20816 | 0.8 | 0.089383 |
Target: 5'- uGC-CGGGGUGGAcgccauccuggaUGAGGcgACCGGCGCCg -3' miRNA: 3'- -CGcGUUCCACCU------------ACUCC--UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26716 | 0.76 | 0.152148 |
Target: 5'- cGCGCAGGGcGG-UGAcGGCgCGGCGCCg -3' miRNA: 3'- -CGCGUUCCaCCuACUcCUG-GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 42106 | 0.75 | 0.177696 |
Target: 5'- cGUGuCGAGGUGGcgGAGGACggcaagcgaaugcaCGGCGCg -3' miRNA: 3'- -CGC-GUUCCACCuaCUCCUG--------------GUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 21151 | 0.75 | 0.179141 |
Target: 5'- cCGgAAGGUGGAcugguacgugGAGGGCuaCAGCGCCg -3' miRNA: 3'- cGCgUUCCACCUa---------CUCCUG--GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 41459 | 0.75 | 0.189044 |
Target: 5'- cGCGCAAGGcUGGGgcgcGGGugaaguaccgcGCCAGCGCUg -3' miRNA: 3'- -CGCGUUCC-ACCUac--UCC-----------UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 7611 | 0.74 | 0.227565 |
Target: 5'- cCGCGAGGU------GGACCAGCGCCg -3' miRNA: 3'- cGCGUUCCAccuacuCCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 47147 | 0.73 | 0.233582 |
Target: 5'- aGCgGCGGccGGUGGc-GAGGcagGCCAGCGCCg -3' miRNA: 3'- -CG-CGUU--CCACCuaCUCC---UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 5265 | 0.73 | 0.246016 |
Target: 5'- gGCGCGuGGUGGGUGcGcGACgGGaCGCCc -3' miRNA: 3'- -CGCGUuCCACCUACuC-CUGgUC-GCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 11340 | 0.73 | 0.258994 |
Target: 5'- cCGCGAGGUGGcgGAaGAacUCGGCGUCa -3' miRNA: 3'- cGCGUUCCACCuaCUcCU--GGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 7038 | 0.72 | 0.293879 |
Target: 5'- cGCGCGGGGUGGgcGAuGAgCCcGCGCg -3' miRNA: 3'- -CGCGUUCCACCuaCUcCU-GGuCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 32883 | 0.71 | 0.308826 |
Target: 5'- aGCGCAuuGGUGGAgcaucGGGGCCGucCGCCu -3' miRNA: 3'- -CGCGUu-CCACCUac---UCCUGGUc-GCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 16044 | 0.71 | 0.332321 |
Target: 5'- cGgGCGAGGU--AUG-GGACguGCGCCa -3' miRNA: 3'- -CgCGUUCCAccUACuCCUGguCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 41258 | 0.71 | 0.332321 |
Target: 5'- cGCGCGgcAGGcUGGAcUGGcGGGCCaugcacAGCGCCc -3' miRNA: 3'- -CGCGU--UCC-ACCU-ACU-CCUGG------UCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 6616 | 0.7 | 0.35795 |
Target: 5'- cCGgGAGGUGGG-GAGacgaagacgcgcgccGCCAGCGCCg -3' miRNA: 3'- cGCgUUCCACCUaCUCc--------------UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 836 | 0.7 | 0.365646 |
Target: 5'- gGCGCAAGGUGa---AGGcauaCGGCGCCa -3' miRNA: 3'- -CGCGUUCCACcuacUCCug--GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 40718 | 0.7 | 0.392112 |
Target: 5'- cGCGCc-GGUGGAccucucGCCGGCGCCg -3' miRNA: 3'- -CGCGuuCCACCUacucc-UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 39614 | 0.69 | 0.410435 |
Target: 5'- aGCGCAccgagcAGGUGGccGcAGGAgUGGCGCa -3' miRNA: 3'- -CGCGU------UCCACCuaC-UCCUgGUCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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