miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 554 0.68 0.498985
Target:  5'- aGgGCGGGGUGGccgucgaaGUGcAGGGCgAGCccccGCCg -3'
miRNA:   3'- -CgCGUUCCACC--------UAC-UCCUGgUCG----CGG- -5'
11604 3' -56.7 NC_003085.1 + 40718 0.7 0.392112
Target:  5'- cGCGCc-GGUGGAccucucGCCGGCGCCg -3'
miRNA:   3'- -CGCGuuCCACCUacucc-UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 39614 0.69 0.410435
Target:  5'- aGCGCAccgagcAGGUGGccGcAGGAgUGGCGCa -3'
miRNA:   3'- -CGCGU------UCCACCuaC-UCCUgGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 27616 0.69 0.419794
Target:  5'- uGCGCGGuGuGUGGAgccugGGGGGCUcGcCGCCa -3'
miRNA:   3'- -CGCGUU-C-CACCUa----CUCCUGGuC-GCGG- -5'
11604 3' -56.7 NC_003085.1 + 17643 0.69 0.429281
Target:  5'- uGCGCAGGcGUgagccacgGGAggGAGGcGCUGGCGCUg -3'
miRNA:   3'- -CGCGUUC-CA--------CCUa-CUCC-UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 18819 0.68 0.458478
Target:  5'- gGCG-AAGGUGGAcccUGAGGaguacuacGCC-GCGCUg -3'
miRNA:   3'- -CGCgUUCCACCU---ACUCC--------UGGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 14870 0.68 0.471456
Target:  5'- cGCGCAAGGUGacggacgagcaGGuguucgccgccauUGAGGaguugcgcaccggccGCCAGCGCg -3'
miRNA:   3'- -CGCGUUCCAC-----------CU-------------ACUCC---------------UGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 26886 0.68 0.472462
Target:  5'- gGCGCc-GGUGGGUGGacucaacaccgucucGGcgGgCAGCGCCa -3'
miRNA:   3'- -CGCGuuCCACCUACU---------------CC--UgGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 18552 0.68 0.478521
Target:  5'- aGCaCGAGGUGGcgGgcaAGGACggccaAGCGCUg -3'
miRNA:   3'- -CGcGUUCCACCuaC---UCCUGg----UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 16044 0.71 0.332321
Target:  5'- cGgGCGAGGU--AUG-GGACguGCGCCa -3'
miRNA:   3'- -CgCGUUCCAccUACuCCUGguCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 41258 0.71 0.332321
Target:  5'- cGCGCGgcAGGcUGGAcUGGcGGGCCaugcacAGCGCCc -3'
miRNA:   3'- -CGCGU--UCC-ACCU-ACU-CCUGG------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 32883 0.71 0.308826
Target:  5'- aGCGCAuuGGUGGAgcaucGGGGCCGucCGCCu -3'
miRNA:   3'- -CGCGUu-CCACCUac---UCCUGGUc-GCGG- -5'
11604 3' -56.7 NC_003085.1 + 30713 0.82 0.061555
Target:  5'- gGCGCAAGGgGGAaGcGGACCGGCGUCc -3'
miRNA:   3'- -CGCGUUCCaCCUaCuCCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 20816 0.8 0.089383
Target:  5'- uGC-CGGGGUGGAcgccauccuggaUGAGGcgACCGGCGCCg -3'
miRNA:   3'- -CGcGUUCCACCU------------ACUCC--UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 26716 0.76 0.152148
Target:  5'- cGCGCAGGGcGG-UGAcGGCgCGGCGCCg -3'
miRNA:   3'- -CGCGUUCCaCCuACUcCUG-GUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 42106 0.75 0.177696
Target:  5'- cGUGuCGAGGUGGcgGAGGACggcaagcgaaugcaCGGCGCg -3'
miRNA:   3'- -CGC-GUUCCACCuaCUCCUG--------------GUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 21151 0.75 0.179141
Target:  5'- cCGgAAGGUGGAcugguacgugGAGGGCuaCAGCGCCg -3'
miRNA:   3'- cGCgUUCCACCUa---------CUCCUG--GUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 41459 0.75 0.189044
Target:  5'- cGCGCAAGGcUGGGgcgcGGGugaaguaccgcGCCAGCGCUg -3'
miRNA:   3'- -CGCGUUCC-ACCUac--UCC-----------UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 11340 0.73 0.258994
Target:  5'- cCGCGAGGUGGcgGAaGAacUCGGCGUCa -3'
miRNA:   3'- cGCGUUCCACCuaCUcCU--GGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 7038 0.72 0.293879
Target:  5'- cGCGCGGGGUGGgcGAuGAgCCcGCGCg -3'
miRNA:   3'- -CGCGUUCCACCuaCUcCU-GGuCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.