miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 44443 0.66 0.624624
Target:  5'- uGCGaauGGUGGAUgugcugacacuugcGAGGGCUGcCGCCu -3'
miRNA:   3'- -CGCguuCCACCUA--------------CUCCUGGUcGCGG- -5'
11604 3' -56.7 NC_003085.1 + 25737 0.68 0.458478
Target:  5'- gGCGCcac---GGUGGGGGCCGGgGCCg -3'
miRNA:   3'- -CGCGuuccacCUACUCCUGGUCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 6289 0.69 0.410435
Target:  5'- cGCGCGGcGGUGGAgcgacuGGAgCAG-GCCg -3'
miRNA:   3'- -CGCGUU-CCACCUacu---CCUgGUCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 9049 0.82 0.059801
Target:  5'- cGCGCcuccgAAGGUGG-UGAGGaguuggaugccgGCCAGCGCCa -3'
miRNA:   3'- -CGCG-----UUCCACCuACUCC------------UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 42443 0.67 0.573282
Target:  5'- cGCGCGAGGgccuUGAGGgcGCCGGUGa- -3'
miRNA:   3'- -CGCGUUCCaccuACUCC--UGGUCGCgg -5'
11604 3' -56.7 NC_003085.1 + 4652 0.67 0.562465
Target:  5'- cGCGCccccGGUGGcaGAGGcgaGCCuuucacGGCGCCg -3'
miRNA:   3'- -CGCGuu--CCACCuaCUCC---UGG------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 49157 0.67 0.541006
Target:  5'- uCGCGGGGgcagcGGAcGGGGACuCGGCGgUCa -3'
miRNA:   3'- cGCGUUCCa----CCUaCUCCUG-GUCGC-GG- -5'
11604 3' -56.7 NC_003085.1 + 9338 0.67 0.541006
Target:  5'- aCGCGcGGcGGcc-AGGACCAGCaGCCg -3'
miRNA:   3'- cGCGUuCCaCCuacUCCUGGUCG-CGG- -5'
11604 3' -56.7 NC_003085.1 + 28598 0.67 0.530379
Target:  5'- uGCGCuGGGUGGgcGGcaccgcagcGGcgaGCuCGGCGCCg -3'
miRNA:   3'- -CGCGuUCCACCuaCU---------CC---UG-GUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 22608 0.68 0.468444
Target:  5'- uGCGCcuccugaaucgAGGGUGGcgGGGGcacacGCCuGGCGCg -3'
miRNA:   3'- -CGCG-----------UUCCACCuaCUCC-----UGG-UCGCGg -5'
11604 3' -56.7 NC_003085.1 + 48751 0.67 0.519829
Target:  5'- gGCGC-GGGUGGAccUGcucAGG-CC-GCGCCc -3'
miRNA:   3'- -CGCGuUCCACCU--AC---UCCuGGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 38986 0.67 0.530379
Target:  5'- cGCGCAgcAGGUcGGccagccGAGGggcGCCAaaGCGCCg -3'
miRNA:   3'- -CGCGU--UCCA-CCua----CUCC---UGGU--CGCGG- -5'
11604 3' -56.7 NC_003085.1 + 26475 0.66 0.610368
Target:  5'- cGCGCAccucuggcugcuuggGGGUGGcagacuGGGCCGGCucguccggcuucGCCg -3'
miRNA:   3'- -CGCGU---------------UCCACCuacu--CCUGGUCG------------CGG- -5'
11604 3' -56.7 NC_003085.1 + 2336 0.68 0.498985
Target:  5'- aCGCAAGGUGGGccuUGcucccGuCCAGCGCg -3'
miRNA:   3'- cGCGUUCCACCU---ACuc---CuGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 38682 0.66 0.595051
Target:  5'- uGCGCGgaagAGGUGGcAUGccc-CCAGCGUCu -3'
miRNA:   3'- -CGCGU----UCCACC-UACuccuGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 7506 0.67 0.541006
Target:  5'- aGCGCAGgugcgucucGGUGGcgGcaaguGGGGCCA-UGCCg -3'
miRNA:   3'- -CGCGUU---------CCACCuaC-----UCCUGGUcGCGG- -5'
11604 3' -56.7 NC_003085.1 + 9696 0.68 0.49589
Target:  5'- aGCGuCAGGGUgaugcGGAUGAGcuccucacgguccuuCCGGCGCUg -3'
miRNA:   3'- -CGC-GUUCCA-----CCUACUCcu-------------GGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 40954 0.68 0.458478
Target:  5'- uGCGCccgcuGGUGcGcgucguacUGGcGGGCCAGCGCCu -3'
miRNA:   3'- -CGCGuu---CCAC-Cu-------ACU-CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 38780 0.66 0.584147
Target:  5'- cGCGCAGGGcUGG-UGuGu-CCAGCacGCCg -3'
miRNA:   3'- -CGCGUUCC-ACCuACuCcuGGUCG--CGG- -5'
11604 3' -56.7 NC_003085.1 + 24230 0.67 0.551704
Target:  5'- aGCGCAccAGGgcggcgccgGuGAUGAGGuACCAGcCGUa -3'
miRNA:   3'- -CGCGU--UCCa--------C-CUACUCC-UGGUC-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.