miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 49157 0.67 0.541006
Target:  5'- uCGCGGGGgcagcGGAcGGGGACuCGGCGgUCa -3'
miRNA:   3'- cGCGUUCCa----CCUaCUCCUG-GUCGC-GG- -5'
11604 3' -56.7 NC_003085.1 + 17989 0.67 0.541006
Target:  5'- cCGCAGGGcacGGAgcugcGAgagcgcGGACUGGCGCCc -3'
miRNA:   3'- cGCGUUCCa--CCUa----CU------CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 23445 0.67 0.541006
Target:  5'- gGCGCAgcAGGgacgcauGAcgGAGGcCCAGCGCa -3'
miRNA:   3'- -CGCGU--UCCac-----CUa-CUCCuGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 13811 0.67 0.530379
Target:  5'- uGCGUgGAGGUGGcgccAUGAcGugCAGaCGCCg -3'
miRNA:   3'- -CGCG-UUCCACC----UACUcCugGUC-GCGG- -5'
11604 3' -56.7 NC_003085.1 + 28598 0.67 0.530379
Target:  5'- uGCGCuGGGUGGgcGGcaccgcagcGGcgaGCuCGGCGCCg -3'
miRNA:   3'- -CGCGuUCCACCuaCU---------CC---UG-GUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 38986 0.67 0.530379
Target:  5'- cGCGCAgcAGGUcGGccagccGAGGggcGCCAaaGCGCCg -3'
miRNA:   3'- -CGCGU--UCCA-CCua----CUCC---UGGU--CGCGG- -5'
11604 3' -56.7 NC_003085.1 + 19663 0.67 0.527205
Target:  5'- gGgGCAaaaaugGGGUGGAcGAgaagcaugccgccaGGGCCAGUGCg -3'
miRNA:   3'- -CgCGU------UCCACCUaCU--------------CCUGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 48751 0.67 0.519829
Target:  5'- gGCGC-GGGUGGAccUGcucAGG-CC-GCGCCc -3'
miRNA:   3'- -CGCGuUCCACCU--AC---UCCuGGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 47989 0.68 0.509362
Target:  5'- -aGCAAGucgcGGAggGAGGACgCGGCGCa -3'
miRNA:   3'- cgCGUUCca--CCUa-CUCCUG-GUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 554 0.68 0.498985
Target:  5'- aGgGCGGGGUGGccgucgaaGUGcAGGGCgAGCccccGCCg -3'
miRNA:   3'- -CgCGUUCCACC--------UAC-UCCUGgUCG----CGG- -5'
11604 3' -56.7 NC_003085.1 + 2336 0.68 0.498985
Target:  5'- aCGCAAGGUGGGccuUGcucccGuCCAGCGCg -3'
miRNA:   3'- cGCGUUCCACCU---ACuc---CuGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 9696 0.68 0.49589
Target:  5'- aGCGuCAGGGUgaugcGGAUGAGcuccucacgguccuuCCGGCGCUg -3'
miRNA:   3'- -CGC-GUUCCA-----CCUACUCcu-------------GGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 18552 0.68 0.478521
Target:  5'- aGCaCGAGGUGGcgGgcaAGGACggccaAGCGCUg -3'
miRNA:   3'- -CGcGUUCCACCuaC---UCCUGg----UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 26886 0.68 0.472462
Target:  5'- gGCGCc-GGUGGGUGGacucaacaccgucucGGcgGgCAGCGCCa -3'
miRNA:   3'- -CGCGuuCCACCUACU---------------CC--UgGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 14870 0.68 0.471456
Target:  5'- cGCGCAAGGUGacggacgagcaGGuguucgccgccauUGAGGaguugcgcaccggccGCCAGCGCg -3'
miRNA:   3'- -CGCGUUCCAC-----------CU-------------ACUCC---------------UGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 22608 0.68 0.468444
Target:  5'- uGCGCcuccugaaucgAGGGUGGcgGGGGcacacGCCuGGCGCg -3'
miRNA:   3'- -CGCG-----------UUCCACCuaCUCC-----UGG-UCGCGg -5'
11604 3' -56.7 NC_003085.1 + 40954 0.68 0.458478
Target:  5'- uGCGCccgcuGGUGcGcgucguacUGGcGGGCCAGCGCCu -3'
miRNA:   3'- -CGCGuu---CCAC-Cu-------ACU-CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 25737 0.68 0.458478
Target:  5'- gGCGCcac---GGUGGGGGCCGGgGCCg -3'
miRNA:   3'- -CGCGuuccacCUACUCCUGGUCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 18819 0.68 0.458478
Target:  5'- gGCG-AAGGUGGAcccUGAGGaguacuacGCC-GCGCUg -3'
miRNA:   3'- -CGCgUUCCACCU---ACUCC--------UGGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 17643 0.69 0.429281
Target:  5'- uGCGCAGGcGUgagccacgGGAggGAGGcGCUGGCGCUg -3'
miRNA:   3'- -CGCGUUC-CA--------CCUa-CUCC-UGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.