Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 3' | -58.7 | NC_003085.1 | + | 24634 | 0.72 | 0.231191 |
Target: 5'- gCGCUUCACCUCGG-CGgaGGAGGCGaaccucggcuUCCg -3' miRNA: 3'- -GCGGAGUGGGGCCuGC--UCUUCGC----------AGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 24658 | 0.67 | 0.486583 |
Target: 5'- aGCCgCGCgCCGcGACGGGcuGAGCGgcaCCa -3' miRNA: 3'- gCGGaGUGgGGC-CUGCUC--UUCGCa--GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 25416 | 0.76 | 0.129489 |
Target: 5'- gCGCUUCGCCaggCGGGCGAGGauGGCGUUg -3' miRNA: 3'- -GCGGAGUGGg--GCCUGCUCU--UCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 25640 | 0.67 | 0.486583 |
Target: 5'- gGCCgggCGCCCCgucuucaaGGACGuGGAGUacaUCCg -3' miRNA: 3'- gCGGa--GUGGGG--------CCUGCuCUUCGc--AGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 26659 | 0.71 | 0.26218 |
Target: 5'- gGCCgUCGCCuCCuGGGCG-GGAGCGgCCg -3' miRNA: 3'- gCGG-AGUGG-GG-CCUGCuCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 28638 | 0.69 | 0.375184 |
Target: 5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3' miRNA: 3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 28640 | 0.72 | 0.237132 |
Target: 5'- uCGCCUCAUCCaGGAU----GGCGUCCa -3' miRNA: 3'- -GCGGAGUGGGgCCUGcucuUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 29981 | 0.7 | 0.303725 |
Target: 5'- aGCagUCAuCCaCCGGAUGGGGAGCGgCCc -3' miRNA: 3'- gCGg-AGU-GG-GGCCUGCUCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 31461 | 0.66 | 0.547849 |
Target: 5'- gGCCUCGCgCCguCGGACaGGAGGCagugaGUCa -3' miRNA: 3'- gCGGAGUG-GG--GCCUGcUCUUCG-----CAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 32539 | 0.68 | 0.428756 |
Target: 5'- gGCCUUGCCCuccaCGGGCGGGGgcuGGgGUgCg -3' miRNA: 3'- gCGGAGUGGG----GCCUGCUCU---UCgCAgG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 33163 | 0.66 | 0.516852 |
Target: 5'- gCGCCUCuguUCCCGacagaaGAgGAGGAGCGgagauugcgCCa -3' miRNA: 3'- -GCGGAGu--GGGGC------CUgCUCUUCGCa--------GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 39774 | 0.66 | 0.546805 |
Target: 5'- cCGCaUCACCCU-GACGcuugaguaccuccAGAAGuCGUCCa -3' miRNA: 3'- -GCGgAGUGGGGcCUGC-------------UCUUC-GCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 39857 | 1.12 | 0.000275 |
Target: 5'- aCGCCUCACCCCGGACGAGAAGCGUCCg -3' miRNA: 3'- -GCGGAGUGGGGCCUGCUCUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 40734 | 0.68 | 0.392533 |
Target: 5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3' miRNA: 3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41013 | 0.7 | 0.326325 |
Target: 5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3' miRNA: 3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41160 | 0.67 | 0.47668 |
Target: 5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3' miRNA: 3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41991 | 0.69 | 0.372627 |
Target: 5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3' miRNA: 3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42219 | 0.67 | 0.466877 |
Target: 5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3' miRNA: 3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42433 | 0.73 | 0.219687 |
Target: 5'- uCGCC-CACCCCGcGCGAGGgccuugagGGCG-CCg -3' miRNA: 3'- -GCGGaGUGGGGCcUGCUCU--------UCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42479 | 0.67 | 0.466877 |
Target: 5'- gGCgUCAUCuCCGaGACGuGAGGCGaaucgCCg -3' miRNA: 3'- gCGgAGUGG-GGC-CUGCuCUUCGCa----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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