miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 15069 0.71 0.289338
Target:  5'- uGCCgucCGCCCCuguGGAUGgucAGAAGCGcCCa -3'
miRNA:   3'- gCGGa--GUGGGG---CCUGC---UCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 15099 0.79 0.081111
Target:  5'- gCGCCUCACCCUcGACGAGcggaugGAGCG-CCg -3'
miRNA:   3'- -GCGGAGUGGGGcCUGCUC------UUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 15433 0.71 0.296463
Target:  5'- uGCCgUCACCauCCGGaACGAG-AGCGgCCa -3'
miRNA:   3'- gCGG-AGUGG--GGCC-UGCUCuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 15628 0.69 0.350149
Target:  5'- gGCCgguggCCGGGCGGaGAGCGUCCa -3'
miRNA:   3'- gCGGaguggGGCCUGCUcUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 16776 0.66 0.527111
Target:  5'- uGCCUuuccgCACCuuGu-UGAGggGCGUCUc -3'
miRNA:   3'- gCGGA-----GUGGggCcuGCUCuuCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 17042 0.66 0.558314
Target:  5'- aCGCCa-ACCuCCGGAgcuuCGAG-GGCGUCg -3'
miRNA:   3'- -GCGGagUGG-GGCCU----GCUCuUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 18436 0.67 0.447591
Target:  5'- gGCCUUugCCCGcGuCGuGGA-CGUCCu -3'
miRNA:   3'- gCGGAGugGGGC-CuGCuCUUcGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 18707 0.7 0.33413
Target:  5'- gGCC-CGCCCCGccugacgaGACGGGAcGCG-CCu -3'
miRNA:   3'- gCGGaGUGGGGC--------CUGCUCUuCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 18946 0.68 0.410397
Target:  5'- uCGCCUacaggGCCCCGcGACGGuGgcGCGcuUCCu -3'
miRNA:   3'- -GCGGAg----UGGGGC-CUGCU-CuuCGC--AGG- -5'
11605 3' -58.7 NC_003085.1 + 19079 0.66 0.516852
Target:  5'- gCGCCg-GgCCCGGACG-GAGuGCG-CCg -3'
miRNA:   3'- -GCGGagUgGGGCCUGCuCUU-CGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 19116 0.72 0.255723
Target:  5'- aCGCCgcagugCGCCCCGcGAC----AGCGUCCg -3'
miRNA:   3'- -GCGGa-----GUGGGGC-CUGcucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 20318 0.66 0.537445
Target:  5'- cCGCCaccuUCACCCUGGAUGAacucuGGgccacGGCG-CCu -3'
miRNA:   3'- -GCGG----AGUGGGGCCUGCU-----CU-----UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 20827 0.67 0.486583
Target:  5'- aCGCC--AUCCUGGAUGAGGcgaccGGCG-CCg -3'
miRNA:   3'- -GCGGagUGGGGCCUGCUCU-----UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 21293 0.66 0.547849
Target:  5'- gCGCCUgCACUUCGuAUGAG-GGCGUCg -3'
miRNA:   3'- -GCGGA-GUGGGGCcUGCUCuUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 21508 0.7 0.33413
Target:  5'- cCGCCccaCACCgCGGACGAGuagauGGGCaaGUCCc -3'
miRNA:   3'- -GCGGa--GUGGgGCCUGCUC-----UUCG--CAGG- -5'
11605 3' -58.7 NC_003085.1 + 21706 0.7 0.326325
Target:  5'- cCGCUUCGCCUCGGACauccAGCG-CCu -3'
miRNA:   3'- -GCGGAGUGGGGCCUGcucuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 22385 0.78 0.098491
Target:  5'- cCGCCccaACCCCGaGACGGGgcGCGUCg -3'
miRNA:   3'- -GCGGag-UGGGGC-CUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 22414 0.66 0.547849
Target:  5'- aGUCcaucgaggUgACCCCGGAcuaccaguccguCGAGGAGCG-CCa -3'
miRNA:   3'- gCGG--------AgUGGGGCCU------------GCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 22889 0.66 0.558314
Target:  5'- cCGCCggACUCCGGuGCGuc-GGCGUUCg -3'
miRNA:   3'- -GCGGagUGGGGCC-UGCucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 24615 0.69 0.383794
Target:  5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3'
miRNA:   3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.