miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 405 0.67 0.47668
Target:  5'- gCGCCUgCGcuCCCUGGACGccagucucGGccGCGUCUa -3'
miRNA:   3'- -GCGGA-GU--GGGGCCUGC--------UCuuCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 670 0.66 0.527111
Target:  5'- uGCCgugaGCCCCGcGA--AGAAGCG-CCg -3'
miRNA:   3'- gCGGag--UGGGGC-CUgcUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 875 0.69 0.383794
Target:  5'- gCGCCU--UCCCGG-CGGu-GGCGUCCg -3'
miRNA:   3'- -GCGGAguGGGGCCuGCUcuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 1361 0.72 0.249396
Target:  5'- cCGCCUgggcucuaCAUCCCucccgacgucugGGACGAGGuguaugagAGCGUCCg -3'
miRNA:   3'- -GCGGA--------GUGGGG------------CCUGCUCU--------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 1515 0.69 0.366706
Target:  5'- gCGCCUCacgGCCgCCaGGCGuGAcuccAGCGUCUg -3'
miRNA:   3'- -GCGGAG---UGG-GGcCUGCuCU----UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 1614 0.71 0.275492
Target:  5'- uCGaCCUCACCCCGGAUGAc--GCGg-- -3'
miRNA:   3'- -GC-GGAGUGGGGCCUGCUcuuCGCagg -5'
11605 3' -58.7 NC_003085.1 + 2423 0.68 0.392533
Target:  5'- uGaCCUCACCCUggGGugGuagauGGAGCG-CCu -3'
miRNA:   3'- gC-GGAGUGGGG--CCugCu----CUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 3467 0.69 0.366706
Target:  5'- cCGUCgUCACCCUGuGGgGAGAGGCGcgcaucugCCg -3'
miRNA:   3'- -GCGG-AGUGGGGC-CUgCUCUUCGCa-------GG- -5'
11605 3' -58.7 NC_003085.1 + 4168 0.67 0.496583
Target:  5'- aCGCCUCcgACgaaggaCCGGACGGGugugacGgGUCCa -3'
miRNA:   3'- -GCGGAG--UGg-----GGCCUGCUCuu----CgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 4648 0.71 0.268769
Target:  5'- -cCCUCGcgcCCCCGGugGcAGAGGCGagCCu -3'
miRNA:   3'- gcGGAGU---GGGGCCugC-UCUUCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 5714 0.66 0.506674
Target:  5'- gCGCC-CACCaCCgGGGCG-GAcccggcucgGGUGUCCc -3'
miRNA:   3'- -GCGGaGUGG-GG-CCUGCuCU---------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 5813 0.66 0.547849
Target:  5'- cCGCC---CCCCGGGCugcuGGAGGCGgauggCCu -3'
miRNA:   3'- -GCGGaguGGGGCCUGc---UCUUCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 6620 0.66 0.536409
Target:  5'- gGuCCUCaaguccgGCgCCGGACGuGAgcgcaaggugcuGGCGUCCc -3'
miRNA:   3'- gC-GGAG-------UGgGGCCUGCuCU------------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 7278 0.67 0.447591
Target:  5'- gCGCCUCAUgCCGaggcuggcugcGACGGGAga-GUCCa -3'
miRNA:   3'- -GCGGAGUGgGGC-----------CUGCUCUucgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 7475 0.8 0.063038
Target:  5'- gCGCCUCACgCUGGAgGuGAcgGGCGUCCg -3'
miRNA:   3'- -GCGGAGUGgGGCCUgCuCU--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 8736 0.73 0.21412
Target:  5'- uGCCUCcgGCgCCGG-CGAGAGguccaccggcGCGUCCa -3'
miRNA:   3'- gCGGAG--UGgGGCCuGCUCUU----------CGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 9441 0.67 0.466877
Target:  5'- aGUC-CGgCCCGuACGGGAAGCGggCCg -3'
miRNA:   3'- gCGGaGUgGGGCcUGCUCUUCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 10241 0.7 0.342072
Target:  5'- aCGCCgUAgCCUGGcCGAGggG-GUCCg -3'
miRNA:   3'- -GCGGaGUgGGGCCuGCUCuuCgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 11300 0.68 0.428756
Target:  5'- -aCCUgCGCCgCGG-CGGGGAGCG-CCa -3'
miRNA:   3'- gcGGA-GUGGgGCCuGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 11784 0.66 0.537445
Target:  5'- gCGCCgCGCUCCGGGCGuGucGGCuGcCCc -3'
miRNA:   3'- -GCGGaGUGGGGCCUGCuCu-UCG-CaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.