miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 39857 1.12 0.000275
Target:  5'- aCGCCUCACCCCGGACGAGAAGCGUCCg -3'
miRNA:   3'- -GCGGAGUGGGGCCUGCUCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 7475 0.8 0.063038
Target:  5'- gCGCCUCACgCUGGAgGuGAcgGGCGUCCg -3'
miRNA:   3'- -GCGGAGUGgGGCCUgCuCU--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 15099 0.79 0.081111
Target:  5'- gCGCCUCACCCUcGACGAGcggaugGAGCG-CCg -3'
miRNA:   3'- -GCGGAGUGGGGcCUGCUC------UUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 22385 0.78 0.098491
Target:  5'- cCGCCccaACCCCGaGACGGGgcGCGUCg -3'
miRNA:   3'- -GCGGag-UGGGGC-CUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 25416 0.76 0.129489
Target:  5'- gCGCUUCGCCaggCGGGCGAGGauGGCGUUg -3'
miRNA:   3'- -GCGGAGUGGg--GCCUGCUCU--UCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 47955 0.74 0.17382
Target:  5'- uGCCUCuugcccgaGCgCCGGACGGGccGCGUCg -3'
miRNA:   3'- gCGGAG--------UGgGGCCUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 8736 0.73 0.21412
Target:  5'- uGCCUCcgGCgCCGG-CGAGAGguccaccggcGCGUCCa -3'
miRNA:   3'- gCGGAG--UGgGGCCuGCUCUU----------CGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 42433 0.73 0.219687
Target:  5'- uCGCC-CACCCCGcGCGAGGgccuugagGGCG-CCg -3'
miRNA:   3'- -GCGGaGUGGGGCcUGCUCU--------UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 43503 0.72 0.225377
Target:  5'- cCGCCUCcagcaGCCCggcgUGGACGGGAacGGCG-CCg -3'
miRNA:   3'- -GCGGAG-----UGGG----GCCUGCUCU--UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 24634 0.72 0.231191
Target:  5'- gCGCUUCACCUCGG-CGgaGGAGGCGaaccucggcuUCCg -3'
miRNA:   3'- -GCGGAGUGGGGCCuGC--UCUUCGC----------AGG- -5'
11605 3' -58.7 NC_003085.1 + 44010 0.72 0.231191
Target:  5'- cCGCaCUCggGCCUCGGcgguggagagACGGGAAGCgGUCCg -3'
miRNA:   3'- -GCG-GAG--UGGGGCC----------UGCUCUUCG-CAGG- -5'
11605 3' -58.7 NC_003085.1 + 42777 0.72 0.237132
Target:  5'- gGCCgcaagcCGCUCCaGGGCcaucaGGGAGGCGUCCa -3'
miRNA:   3'- gCGGa-----GUGGGG-CCUG-----CUCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 28640 0.72 0.237132
Target:  5'- uCGCCUCAUCCaGGAU----GGCGUCCa -3'
miRNA:   3'- -GCGGAGUGGGgCCUGcucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 1361 0.72 0.249396
Target:  5'- cCGCCUgggcucuaCAUCCCucccgacgucugGGACGAGGuguaugagAGCGUCCg -3'
miRNA:   3'- -GCGGA--------GUGGGG------------CCUGCUCU--------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 19116 0.72 0.255723
Target:  5'- aCGCCgcagugCGCCCCGcGAC----AGCGUCCg -3'
miRNA:   3'- -GCGGa-----GUGGGGC-CUGcucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 26659 0.71 0.26218
Target:  5'- gGCCgUCGCCuCCuGGGCG-GGAGCGgCCg -3'
miRNA:   3'- gCGG-AGUGG-GG-CCUGCuCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 4648 0.71 0.268769
Target:  5'- -cCCUCGcgcCCCCGGugGcAGAGGCGagCCu -3'
miRNA:   3'- gcGGAGU---GGGGCCugC-UCUUCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 1614 0.71 0.275492
Target:  5'- uCGaCCUCACCCCGGAUGAc--GCGg-- -3'
miRNA:   3'- -GC-GGAGUGGGGCCUGCUcuuCGCagg -5'
11605 3' -58.7 NC_003085.1 + 15069 0.71 0.289338
Target:  5'- uGCCgucCGCCCCuguGGAUGgucAGAAGCGcCCa -3'
miRNA:   3'- gCGGa--GUGGGG---CCUGC---UCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 15433 0.71 0.296463
Target:  5'- uGCCgUCACCauCCGGaACGAG-AGCGgCCa -3'
miRNA:   3'- gCGG-AGUGG--GGCC-UGCUCuUCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.