miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 43747 0.67 0.45718
Target:  5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3'
miRNA:   3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 18707 0.7 0.33413
Target:  5'- gGCC-CGCCCCGccugacgaGACGGGAcGCG-CCu -3'
miRNA:   3'- gCGGaGUGGGGC--------CUGCUCUuCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 1515 0.69 0.366706
Target:  5'- gCGCCUCacgGCCgCCaGGCGuGAcuccAGCGUCUg -3'
miRNA:   3'- -GCGGAG---UGG-GGcCUGCuCU----UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 41991 0.69 0.372627
Target:  5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3'
miRNA:   3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 28638 0.69 0.375184
Target:  5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3'
miRNA:   3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 2423 0.68 0.392533
Target:  5'- uGaCCUCACCCUggGGugGuagauGGAGCG-CCu -3'
miRNA:   3'- gC-GGAGUGGGG--CCugCu----CUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 40734 0.68 0.392533
Target:  5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3'
miRNA:   3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 18946 0.68 0.410397
Target:  5'- uCGCCUacaggGCCCCGcGACGGuGgcGCGcuUCCu -3'
miRNA:   3'- -GCGGAg----UGGGGC-CUGCU-CuuCGC--AGG- -5'
11605 3' -58.7 NC_003085.1 + 18436 0.67 0.447591
Target:  5'- gGCCUUugCCCGcGuCGuGGA-CGUCCu -3'
miRNA:   3'- gCGGAGugGGGC-CuGCuCUUcGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 21706 0.7 0.326325
Target:  5'- cCGCUUCGCCUCGGACauccAGCG-CCu -3'
miRNA:   3'- -GCGGAGUGGGGCCUGcucuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 41013 0.7 0.326325
Target:  5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3'
miRNA:   3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 29981 0.7 0.303725
Target:  5'- aGCagUCAuCCaCCGGAUGGGGAGCGgCCc -3'
miRNA:   3'- gCGg-AGU-GG-GGCCUGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 7475 0.8 0.063038
Target:  5'- gCGCCUCACgCUGGAgGuGAcgGGCGUCCg -3'
miRNA:   3'- -GCGGAGUGgGGCCUgCuCU--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 15099 0.79 0.081111
Target:  5'- gCGCCUCACCCUcGACGAGcggaugGAGCG-CCg -3'
miRNA:   3'- -GCGGAGUGGGGcCUGCUC------UUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 22385 0.78 0.098491
Target:  5'- cCGCCccaACCCCGaGACGGGgcGCGUCg -3'
miRNA:   3'- -GCGGag-UGGGGC-CUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 47955 0.74 0.17382
Target:  5'- uGCCUCuugcccgaGCgCCGGACGGGccGCGUCg -3'
miRNA:   3'- gCGGAG--------UGgGGCCUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 43503 0.72 0.225377
Target:  5'- cCGCCUCcagcaGCCCggcgUGGACGGGAacGGCG-CCg -3'
miRNA:   3'- -GCGGAG-----UGGG----GCCUGCUCU--UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 24634 0.72 0.231191
Target:  5'- gCGCUUCACCUCGG-CGgaGGAGGCGaaccucggcuUCCg -3'
miRNA:   3'- -GCGGAGUGGGGCCuGC--UCUUCGC----------AGG- -5'
11605 3' -58.7 NC_003085.1 + 44010 0.72 0.231191
Target:  5'- cCGCaCUCggGCCUCGGcgguggagagACGGGAAGCgGUCCg -3'
miRNA:   3'- -GCG-GAG--UGGGGCC----------UGCUCUUCG-CAGG- -5'
11605 3' -58.7 NC_003085.1 + 1361 0.72 0.249396
Target:  5'- cCGCCUgggcucuaCAUCCCucccgacgucugGGACGAGGuguaugagAGCGUCCg -3'
miRNA:   3'- -GCGGA--------GUGGGG------------CCUGCUCU--------UCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.