miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 22889 0.66 0.558314
Target:  5'- cCGCCggACUCCGGuGCGuc-GGCGUUCg -3'
miRNA:   3'- -GCGGagUGGGGCC-UGCucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 47708 0.69 0.366706
Target:  5'- cCGUCUC-CCCauaGGGCGGGuccgugacgauGGCGUCUa -3'
miRNA:   3'- -GCGGAGuGGGg--CCUGCUCu----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 47109 0.69 0.35836
Target:  5'- gGCCUCGCacugcgccuCCCGGAUGucgcaaccgauGAAGCGgcggCCg -3'
miRNA:   3'- gCGGAGUG---------GGGCCUGCu----------CUUCGCa---GG- -5'
11605 3' -58.7 NC_003085.1 + 25416 0.76 0.129489
Target:  5'- gCGCUUCGCCaggCGGGCGAGGauGGCGUUg -3'
miRNA:   3'- -GCGGAGUGGg--GCCUGCUCU--UCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 670 0.66 0.527111
Target:  5'- uGCCgugaGCCCCGcGA--AGAAGCG-CCg -3'
miRNA:   3'- gCGGag--UGGGGC-CUgcUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 5714 0.66 0.506674
Target:  5'- gCGCC-CACCaCCgGGGCG-GAcccggcucgGGUGUCCc -3'
miRNA:   3'- -GCGGaGUGG-GG-CCUGCuCU---------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 24658 0.67 0.486583
Target:  5'- aGCCgCGCgCCGcGACGGGcuGAGCGgcaCCa -3'
miRNA:   3'- gCGGaGUGgGGC-CUGCUC--UUCGCa--GG- -5'
11605 3' -58.7 NC_003085.1 + 42219 0.67 0.466877
Target:  5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3'
miRNA:   3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 7278 0.67 0.447591
Target:  5'- gCGCCUCAUgCCGaggcuggcugcGACGGGAga-GUCCa -3'
miRNA:   3'- -GCGGAGUGgGGC-----------CUGCUCUucgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 875 0.69 0.383794
Target:  5'- gCGCCU--UCCCGG-CGGu-GGCGUCCg -3'
miRNA:   3'- -GCGGAguGGGGCCuGCUcuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 11300 0.68 0.428756
Target:  5'- -aCCUgCGCCgCGG-CGGGGAGCG-CCa -3'
miRNA:   3'- gcGGA-GUGGgGCCuGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 46100 0.67 0.45718
Target:  5'- gGUCUCauuggGCUCaCGGGCGucgGGGAGCGUCg -3'
miRNA:   3'- gCGGAG-----UGGG-GCCUGC---UCUUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 21293 0.66 0.547849
Target:  5'- gCGCCUgCACUUCGuAUGAG-GGCGUCg -3'
miRNA:   3'- -GCGGA-GUGGGGCcUGCUCuUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 32539 0.68 0.428756
Target:  5'- gGCCUUGCCCuccaCGGGCGGGGgcuGGgGUgCg -3'
miRNA:   3'- gCGGAGUGGG----GCCUGCUCU---UCgCAgG- -5'
11605 3' -58.7 NC_003085.1 + 5813 0.66 0.547849
Target:  5'- cCGCC---CCCCGGGCugcuGGAGGCGgauggCCu -3'
miRNA:   3'- -GCGGaguGGGGCCUGc---UCUUCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 9441 0.67 0.466877
Target:  5'- aGUC-CGgCCCGuACGGGAAGCGggCCg -3'
miRNA:   3'- gCGGaGUgGGGCcUGCUCUUCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 24615 0.69 0.383794
Target:  5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3'
miRNA:   3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 3467 0.69 0.366706
Target:  5'- cCGUCgUCACCCUGuGGgGAGAGGCGcgcaucugCCg -3'
miRNA:   3'- -GCGG-AGUGGGGC-CUgCUCUUCGCa-------GG- -5'
11605 3' -58.7 NC_003085.1 + 16776 0.66 0.527111
Target:  5'- uGCCUuuccgCACCuuGu-UGAGggGCGUCUc -3'
miRNA:   3'- gCGGA-----GUGGggCcuGCUCuuCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 4168 0.67 0.496583
Target:  5'- aCGCCUCcgACgaaggaCCGGACGGGugugacGgGUCCa -3'
miRNA:   3'- -GCGGAG--UGg-----GGCCUGCUCuu----CgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.